statistical-mechanics

There are 8 repositories under statistical-mechanics topic.

• msuzen / looper

  A resource list for causality in statistics, data science and physics

  bayesian-inferencecausalcausal-discoverycausal-impactcausal-inferencecausal-machine-learningcausal-modelscausal-networkscausalitycausality-algorithmscausality-analysiscausationdata-sciencemachine-learningmeta-learningphysicsstatistical-inferencestatistical-mechanicsstatistical-physicsstatistics
  248

• torchmd / mdgrad

  Pytorch differentiable molecular dynamics

  quantum-dynamicsmolecular-dynamicsstatistical-mechanicsphysics-simulationchemistrygraph-neural-networkspolymerforce-field-optimizationdifferentiable-simulationsquantum-isomerization
  Language:Python 163

• osscar-org / quantum-mechanics

  A collection of interactive notebooks to explain concepts of quantum mechanics and related topics

  band-theorycomputational-materials-scienceinteractive-notebooksjupyterjupyter-notebooksmolecular-dynamicsquantum-mechanicssolid-state-physicsstatistical-mechanics
  Language:Jupyter Notebook 79

• CederGroupHub / smol

  Statistical Mechanics on Lattices

  cluster-expansionmaterials-sciencemonte-carlostatistical-mechanicsising-modellattice-gas
  Language:Python 59

• emptymalei / statisticalphysics

  open source E-book on statistical physics

  statistical-physicsstatistical-mechanics
  Language:Jupyter Notebook 42

• wwang2 / Coarse-Graining-Auto-encoders

  generative-modelmachine-learningmolecular-dynamicsstatistical-mechanics
  Language:Jupyter Notebook 38

• fjosw / pyerrors

  Error propagation and statistical analysis for Markov chain Monte Carlo simulations in lattice QCD and statistical mechanics using autograd

  pythonlattice-qcdmonte-carlodata-analysisstatistical-analysislattice-field-theoryautocorrelationmarkov-chainerror-propagationparticle-physicsstatistical-mechanicsautogradcondensed-matterautomatic-differentiationcorrelationphysicsqcd
  Language:Python 34

• msuzen / bristol

  Parallel random matrix tools and complexity for deep learning

  deep-learning-papersdeep-learningrandom-matrix-theoryergodicitystatistical-mechanicsspin-glassneural-architecture-searchrandom-matricescircular-ensemblesmachine-learning-algorithmscomplexity-measuredeep-learning-complexitycomplexity-analysis
  Language:Jupyter Notebook 33

• pierrebaudot / infotopopy

  computes most of information functions (joint entropy, conditional, mutual information, total correlation information distance) and deep information networks

  topological-data-analysisinformation-theorystatistical-structurescomplex-systemsstatistical-mechanicsdeep-learningmutual-informationentropyconditional-probabilitycausal-inferencecorrelationinformation-cohomologyinformation-topologystatistical-systemscomplexphysics
  Language:Python 32

• mcbal / spin-model-transformers

  Physics-inspired transformer modules based on mean-field dynamics of vector-spin models in JAX

  artificial-intelligenceattention-mechanismdeep-learningneural-networksstatistical-physicsassociative-memoryhopfield-networksmean-field-theorytransformersising-spin-modelsnon-equilibrium-dynamicsstatistical-mechanicsspin-glassesfixed-point-iterationvector-spin-modelstime-evolutionpartition-functionsspin-modelsnear-equilibrium-dynamics
  Language:Python 30

• SM-at-THU / StatisticalMechanics

  This is a collection of answers to a SM book written by R. K. Pathria & Paul D. Beale. Lecture notes can be added too.

  statistical-mechanicsreadingnotes
  Language:TeX 30

• charlesreid1 / statistical-mechanics

  Lorenz attractors, statistical mechanics, nonlinear dynamical systems, computational physics.

  lorenz-attractorcomputational-physicsmolecular-dynamicsbrownian-motionlangevin-equationsstatistical-mechanics
  Language:Jupyter Notebook 24

• npshub / simulation

  :book: Algorithms in simulation: Markov chain Monte Carlo, Hybrid Monte Carlo, Heat Bath Algorithm, Path integral, Density matrices etc.

  simulationstatistical-mechanicsphysics-simulationpython
  Language:Jupyter Notebook 23

• DiODeProject / MuMoT

  Multiscale Modelling Tool - mathematical modelling without the maths

  mathematical-modellingstatistical-mechanicsnonlinear-dynamicsbifurcation-analysisindividual-based-modellingstochastic-simulation-algorithm
  Language:Python 21

• HussainAther / physics

  mechanics, statistical mechanics, fluid dynamics, thermodynamics, quantum mechanics, electromagnetism

  mechanicsstatistical-mechanicsfluid-dynamicsthermodynamicsquantum-mechanicselectromagnetismphysics
  Language:Python 21

• rafael-fuente / Ideal-Gas-Simulation-To-Verify-Maxwell-Boltzmann-distribution

  Simulation of an Ideal Gas to Verify Maxwell-Boltzmann distribution

  physicsphysics-simulationstatistical-mechanicsideal-gas
  Language:Python 21

• refraction-ray / admc

  Infinite order automatic differentiation for Monte Carlo with unnormalized probability distribution

  automatic-differentiationmonte-carlostatistical-mechanicsvariational-monte-carlotensorflow
  21

• indrag49 / Computational-Stat-Mech

  Algorithms used in Statistical Mechanics

  statistical-mechanicspythonmonte-carlo-simulation
  Language:Python 18

• JuliaWaveScattering / EffectiveWaves.jl

  A package to calculate ensemble averaged waves in heterogeneous materials. The focus is on wave propagation, scattering, and reflection, from particulate and porous materials.

  julia-languagewaveseffective-wavenumberswave-reflectionstatistical-mechanicsjuliascatteringmultiple-scatteringwave-propagationpolydispersitypolydisperserandom-particulate-materials
  Language:Julia 18

• arghyadutta / resources

  Links to books, webpages, essays, apps, and other stuff from the internet.

  linksresourcesbooksquantum-mechanicsstatistical-mechanicsblogsessayswritingresearch-paper
  Language:Shell 17

• quantumjot / PyFolding

  Python framework for multi-parameter optimization and evaluation of protein folding models

  optimizationmodel-fittingsimulationstatistical-mechanics
  Language:Python 16

• wehs7661 / boltzmann_generators

  A repository for the final project implementing/applying Boltzmann generators for Computational Statistical Physics (PHYS 7810) at CU Boulder

  free-energy-calculationsflow-based-modelnvpneural-networkstatistical-mechanicsdeep-learningmolecular-mechanicspython
  Language:Jupyter Notebook 14

• AlicePagano / Lecture-Notes-of-Statistical-Mechanics

  Lectures of the course of Statistical Mechanics at the University of Padova (2019/2020)

  statistical-mechanicslatex-document
  Language:TeX 13

• fdmatoz / PyMembrane

  Advanced Coarse-Grained Membrane Simulation

  biologychemistrycomputational-physicscppelasticitymembranesminimizationmolecular-dynamicsmonte-carlo-simulationphysicspythonstatistical-mechanics
  Language:C++ 12

• pierrebaudot / INFOTOPO

  Programs for Information Topology Data Analysis

  data-analysisdata-structurepattern-recognitionstatistical-learningstatistical-mechanicsinformation-topologyinformation-theoryinformation-landscapesentropymutual-informationsynergynetworkfree-energycomplex-systemscomplex-networks
  Language:Python 12

• apallath / WHAM

  Python package to construct free energy profiles from biased molecular simulation data using both log-likelihood maximization and self-consistent iteration approaches.

  statistical-mechanicsoptimizationmaximum-likelihood
  Language:Python 11

• DavidMichaelH / statistical-mechanics-models

  Statistical mechanics models such as random cluster models, random growth models and related processes.

  simulationphysics-simulationprobabilistic-modelsprobabilitystatistical-physicsstatistical-mechanicspercolation
  Language:Jupyter Notebook 11

• maiani / thermalspin

  Monte Carlo simulator for classical Heisenberg model

  physicsphysics-simulationmagnetismstatistical-mechanics
  Language:Jupyter Notebook 11

• wehs7661 / ensemble_md

  A python package for performing GROMACS simulation ensembles

  advanced-sampling-methodsfree-energy-calculationsmolecular-dynamicsstatistical-mechanicsexpanded-ensemblesparallel-computingpythonreplica-exchangedrug-designprotein-simulations
  Language:Python 11

• CederGroupHub / WFacer

  Modulated automation of cluster expansion based on atomate2 and Jobflow

  atomistic-modellingcluster-expansionstatistical-mechanicslattice-thermodynamics
  Language:Python 10

• mjo22 / spatialstats

  spatialstats is collection of statistical tools and utility routines used to analyze the multi-scale structure of 2D and 3D spatial fields and particle distributions.

  spectral-analysisbispectrumstructure-factorpowerspectrumcupy3d-spatial-fieldscorrelation-functionsnumbapolyspectracondensed-matter-physicsfield-theoryparticle-simulationstatistical-mechanics
  Language:Python 10

• VictorSeven / FHPLatticeGas

  A C++ implementation of the FHP Lattice Gas Cellular Automata

  cellular-automatastatistical-mechanicsfluid-simulation
  Language:C++ 10

• zapier / saasr

  A SaaS subscription simulator - a tool to learn about the statistical mechanics of subscriptions

  saas-subscription-simulatorsimulatorstatistical-mechanicssubscription
  Language:R 10

• PostQuantum / Buckyball-Ising-Model

  We give the solutions for the Song-Shan-Hu Sping School Coding Challenge in this repo.

  statistical-mechanics
  Language:Mathematica 9

• wehs7661 / advanced_sampling_tutorials

  A repository providing jupyter notebooks and simulation inputs that accompany the mini course Hands-on tutorials: Advanced sampling methods using GROMACS

  advanced-sampling-methodsfree-energy-calculationsgromacsmolecular-dynamicsstatistical-mechanicstutorialsexpanded-ensemblesmetadynamicsreplica-exchangeumbrella-sampling
  Language:Jupyter Notebook 9

• sfalmo / NeuralDFT-Tutorial

  Neural functional theory for inhomogeneous fluids - Tutorial

  machine-learningsoft-matterstatistical-mechanicsclassical-density-functional-theorymonte-carlo-simulationneural-networks
  Language:Jupyter Notebook 8