Daisuke Goto's repositories
adcomp
AD computation with Template Model Builder (TMB)
SEIBMFoodWeb
A spatially explicit individual-based food web model for a large ecosystem
SEIBMRiverFish
A spatially explicit (1D) individual-based model for large river fish
SpatioTempFishProduction
Estimation of spatial-temporal variability of fish biomass and production using survey data
TransDynFish
Data and code used in "Transient demographic dynamics of recovering fish populations shaped by past climate variability, harvest, and management"
asdar-book.org
data and scripts for the ASDAR book
bayestestR
:ghost: Utilities for analyzing Bayesian models and posterior distributions
CASAL2
Integrated Population Dynamics Model (Casal2)
example-models
Example models for Stan
FishStatsUtils
Shared resources for spatio-temporal models
FSA
FSA (Fisheries Stock Assessment) package provides R functions to conduct typical introductory fisheries analyses.
ggmcmc
Graphical tools for analyzing Markov Chain Monte Carlo simulations from Bayesian inference
glmmTMB
glmmTMB
icesDatras
R interface to DATRAS trawl database web services
icesSAG
R interface to Stock Assessment Graphs database web services
mizer
Multi-species size-based ecological modelling in R
r4ss
files for r4ss package
rcpp-gallery
Source code for the Rcpp Gallery website
rethinking
Statistical Rethinking course and book package
SAM
Git page for SAM R-package
ss3om
Tools to load SS3 outputs and generate grids of model runs for OM conditioning
ss3sim
An R package for stock-assessment simulation with Stock Synthesis
SSS
Simple Stock Synthesis code and examples
StateSpaceModels.jl
StateSpaceModels.jl is a Julia package for time-series analysis using state-space models.
Statistical-Methods-Seminar-Series
Repository for code shared be presenters in the EFI hosted Statistical Methods Seminar Series
VAST
Spatio-temporal analysis of univariate or multivariate data, e.g., standardizing data for multiple species or stages
wham
State-space, age-structured fish stock assessment model