charlesrocabert

Evo2Sim

Digital evolution model dedicated to bacterial in silico experimental evolution.

MetEvolSim

MetEvolSim (Metabolome Evolution Simulator). A Python package to simulate the long-term evolution of metabolic levels.

MoRIS

MoRIS (Model of Routes of Invasive Spread). A simulator of human-mediated dispersal via transportation networks.

gbapy

Growth balance analysis in Python

Koch-et-al-Predictability-of-Gene-Expression

Tribolium castaneum transcriptomics pipeline developed for Koch et al. manuscript "Gene expression evolution is predicted by stronger selection at more pleiotropic genes".

charlesrocabert

charlesrocabert.github.io

charlesrocabert.github.io.utterances.comments

Personal blog comments management.

puutools

Easy-to-use C++ library for the live tracking of lineage and coalescence trees in individual-based forward-in-time simulations.

SigmaFGM

Individual-based implementation of Fisher's geometric model with evolvable phenotypic noise.

Thesis

Thesis manuscript (defended Nov. 17th, 2017).

Tribolium-castaneum-transcriptomics-pipeline

Tribolium castaneum integrative-omics pipeline

Rocabert-et-al-2023-Ecography

Supporting information for Rocabert et al. (2023) Ecography publication "Accounting for the topology of road networks to better explain human-mediated dispersal in terrestrial landscapes"