community-ecology

There are 4 repositories under community-ecology topic.

• AndrewLJackson / SIBER

  ellipse and convex hull fitting package for stable isotope data

  stable-isotopescommunity-ecologyecologyniche-modelling
  Language:HTML 33

• gottacatchenall / MetacommunityDynamics.jl

  population and community dynamics on spatial graphs, in julia. (formerly EcoDynamics.jl)

  juliaecojuliadynamicssimulationecologycommunity-ecologyspatial-ecologylandscape-ecologymacroecology
  Language:Julia 20

• ropensci / phylocomr

  Phylocom R interface

  evolutionecologycommunity-ecologyrrstatsr-package
  Language:HTML 14

• DEMENT-Model / DEMENTpy

  A spatially explicit trait- and individual-based microbial systems modelling framework

  dementtraitmicroorganismbacteriafungiindividual-based-modellingenzymeecologycommunity-ecologysoilbiologydementpytrait-based-modellinglitterdecompositiontradeoffmicrobiomefungusgenomeomics
  Language:Python 13

• weecology / portalr

  A collection of functions to summarize the Portal Data

  ecologycommunity-ecologysmall-mammal-trapping
  Language:R 11

• belg92 / HMSC

  Hierarchical Model of Species Communities (HMSC) is an R package, which provides extensive set of analytical tools devised for numerical analysis of data on ecological communities or other similarly structured data. The methodological core of the HMSC approach is centered on combination of hierarchical regression and latent factor models.

  latent-factor-modelcommunity-ecologybayesian-data-analysis
  Language:R 10

• EcologicalTraitData / ETS

  A Data Standard for Ecological Trait Datasets

  trait-ontologyecologytraitscommunity-ecologymorphometrics
  Language:HTML 10

• kohortz / kohortz

  Cohortz & Kohortz - Collaboration Portal

  teamcohortstudystudentsstudent-projectcollaborative-researchcollaborative-optimizationlearning-management-systemproject-managementefficiencyresearchux-uihudworkspace-managercommunity-ecologyknowledge-graphcode-forensics
  3

• zipkinlab / Farr_etal_2022_ConsBiol

  M.T. Farr, T. O’Brien, C.B. Yackulic, and E.F. Zipkin. (2022). Quantifying the conservation status and abundance trends of wildlife communities with detection-nondetection data. Conservation Biology e13934.

  community-ecologydemographic-ratesmultiple-species-modelingpopulation-viabilityunmarked-modeling
  Language:R 3

• zipkinlab / Rossman_etal_2016_EcolAndEvol

  Rossman S., Ostrom P.H., Gordon F., and Zipkin E.F. 2016. Beyond carbon and nitrogen: guidelines for estimating three‐dimensional isotopic niche space. Ecology and Evolution 6: 2405-2413.

  bayesian-analysiscommunity-ecologynichestable-isotopes
  Language:R 3

• katherinehebert / insular-mammals

  Code to make figures and certain analyses from "Source pool diversity and proximity shape the compositional uniqueness of insular mammal assemblages worldwide" (2021)

  community-ecologyinsular-mammalssource-pool-diversity
  Language:R 2

• SustainableCommunityDevelopmentHub / nedgreenhouse

  hugo static site generator based site hosted on Netlify for Nederland Community Greenhouse project

  netlifyhugo-sitenederland-community-greenhousenetlify-cmscommunity-projectcommunity-ecologycommunity-engagmentcommunity
  Language:CSS 2

• TobiasRoth / detectionfilter

  This repository contains all the materials needed to reproduce Roth et. al (2017): Functional ecology and imperfect detection of species. Methods in Ecology and Evolution.

  imperfect-detectioncommunity-ecologyoccupancy-modeling
  Language:R 2

• Constellat-io / Constellatio.github.io

  Constellat.io

  cloud-computingcommunity-ecologydistributed-storagegraph-theoryhigh-dimensional-dataknowledgenatural-language-processingresearchsemantic-datastate-machinetaxonomiesvisualization
  Language:HTML 1

• kguidonimartins / comm-func-phylo-workflow

  rcommunity-ecologyfunctional-ecologyphylodiversity
  Language:HTML 1
• Sarracenia-Microbiome-Project

  bathyscapher / Sarracenia-Microbiome-Project

  sequencingcommunity-ecologybioinformatics-analysisdada2r
  Language:R 0

• BreitmanLab / breitmanlab.github.io

  Breitman Lab website

  alabamacommunity-ecologyevolutionary-biologyherpetologylaboratorymentoringresearchscienceteachingurban-ecologypeer-mentoring
  Language:CSS 0

• INCT-EECBio / FishPhyloMaker

  Making phylogenies for a list of fish species

  incteecbioinct-eecbiocommunity-ecologyincteecbio-community-ecology
  Language:R 0

• mabarbour / genes-to-foodweb-stability

  This repository contains data and code to reproduce analyses reported in the manuscript, "A keystone gene underlies the persistence of an experimental food web".

  geneticsfood-webcommunity-ecologyarabidopsis-thalianacommunity-stability
  Language:R 0

• marianavelezmunera / CommunityEcologyInR

  Code for community ecology analysis

  community-ecologyr
  Language:R 0

• maudbv / trait-analysis-function

  R functions for trait analysis of ecological communities

  community-ecologyecologytraits
  Language:R 0

• nisiddharth / Blow-The-Garbage

  Official Droidrush repository of NPDevs team (Avishkar-2019--Annual Techfest of MNNIT Allahabad)

  androidandroid-studioavishkarcleanlinesscommunity-ecologycommunity-healthfirebasegarbage-collectiongoogle-maps-apimapbox-apimnnitswachhswachh-bharat
  Language:Java 0

• TraxlerLab / BlodgettProject

  Code associated with the following manuscript, currently in review: M.S. Fischer, N.J. Patel, P.J. De Lorimier, M.F. Traxler "Prescribed fire selects for a pyrophilous soil subcommunity in a northern California mixed conifer forest"

  amplicon-sequencing16s-seqcommunity-ecologyits-sequenceprescribedfire
  Language:R 0

• cjabradshaw / random-forests-for-predicting-predator-prey-interactions-in-terrestrial-vertebrates

  R code for "Predicting predator-prey interactions in terrestrial endotherms using random forest"

  birdsecological-networksmammalsrandom-foreststerrestrial-communitiestrophic-ecologytrophic-webcommunity-ecologyecologymachine-learningpredator-preypredatorspreyco-extinctiontrophic-cascade
  Language:R

• isaacovercast / gimmeSAD

  Joint modelling of abundance and genetic diversity. An integrated model of population genetics and community ecology.

  species-abundance-distributionspopulation-geneticsabundancecommunity-ecologyapproximate-bayesian-computationcommunity-genetic-diversity
  Language:Jupyter Notebook