photosynthesis

There are 2 repositories under photosynthesis topic.

• HarveyBates / Phenobottle

  An open-source Raspberry-Pi based photobioreactor for cultivating and assessing physiology (photosynthesis & productivity) in microscopic algae.

  algaearduinobioreactorchlorophyll-fluorescencefluorescencemicroalgaephotobioreactorphotosynthesisraspberry-pi
  Language:C++ 53

• HarveyBates / Open-JIP

  An open-source Arduino based chlorophyll fluorometer for quantifying photosynthesis in photosynthetic organisms.

  fluorescenceelectronicschlorophyllphotosynthesismicroalgaealgaeojipfluorometerchlorophyll-fluorometerplants
  Language:C++ 25

• HPQC-LABS / FeynDyn

  Type an M x M matrix for your open quantum system Hamiltonian, and give a spectral density (analytic or numerical). FeynDyn gives the density matrix dynamics according to the Leggett-Caldeira bath or the Feynman-Vernon bath at any temperature. Can do up to 16 qubits (65536 levels) and infinitely many bath modes. Email nike@hpqc.org for the latest version or any questions.

  feynman-diagramsfeynman-integralsmatlabnanotechnologynumerical-methodsphotosynthesisquantumquantum-chemistryquantum-computingquantum-dotsquantum-dynamicsquantum-mechanicsquantum-simulationquantum-simulatorscientific-computing
  Language:MATLAB 21

• mdekauwe / GDAY

  GDAY simulates carbon, nitrogen & water dynamics

  photosynthesisnitrogencleafsoilplantwater
  Language:C 14

• trevorkeenan / gpp-co2

  Code to reproduce the analysis and figures in 'A constraint on historic growth in global photosynthesis due to increasing CO2' Keenan et al. 2021. Nature https://www.nature.com/articles/s41586-021-04096-9

  co2fertilizationgppland-sinkphotosynthesis
  6

• cropbox / LeafGasExchange.jl

  🍃 coupled leaf gas-exchange model

  photosynthesisgas-exchangecrop-modelecophysiologystomatacropboxjulia
  Language:Julia 5

• jnnsbrr / PhotoBioDynamics

  Small model to simulate biomass production on a global scale. Products are Gross Primary Production (GPP), Net Primary Production (NPP). It is based on a modified version of the Farquhar approach (Haxeltine and Prentice 1996, Farquhar et al. 1980). Where possible, it uses vectorization and parallelization and dynamically downloads latest av

  photosynthesisgppnppnepglobalbiomassgridded-datatime-seriesdatadata-wranglingscientific-modellingparallelization
  Language:R 5

• ManuelLamothe / RapidACi

  R scripts for automatic correction of Rapid A-Ci curves

  photosynthesisli-cor6800automationvcmaxjmax
  Language:R 5

• cropbox / plants2020

  coupled leaf gas-exchange model for C₄ leaves comparing stomatal conductance models

  gas-exchangephotosynthesisstomataecophysiologyjuliacropbox
  Language:Jupyter Notebook 4

• MaisaMilena / WWDC18_Photosynthesis

  [accepted] This is my playground submitted for WWDC18 Scholarship

  photosynthesisplaygroundspritekitwwdc18wwdc-scholarshipwwdc-winneraccepted
  Language:Swift 3

• SmartBioTech / PBR-ControlScripts

  Control Scripts for Photon Systems Instruments (PSI) Bioreactor Client

  automationpsiphotobioreactormicroalgaeoptimization-algorithmsoptimization-toolsgrowth-characterizationprotocol-scriptingmeasurementrespirationphotosynthesisalgaecyanobacteriagrowth-rate
  Language:JavaScript 3

• dkauf42 / PIcurves

  Functions and a walkthrough to visualize common photosynthesis-irradiance relationships

  phytoplanktonphotosynthesisirradiance
  Language:MATLAB 2

• LukeEcomod / APES_Jan2016

  APES (Atmosphere - Plant - Exchange Simulator) codes in Matlab

  ecological-modelsecological-modellingfluxnetphotosynthesistranspirationbryophytes
  2

• MarkusLoew / Li6400helper

  Helper functions for Licor 6400 IRGA gas exchange files

  photosynthesisecophysiologyirga
  Language:R 2

• Prikaziuk / FvCB_photosynthesis

  GUI for the C3 photosynthesis Farquhar, von Caemmerer & Berry model (1980)

  photosynthesisbiochemical-modelbiochemical-process
  Language:MATLAB 2

• savetz / AppleII-photosynthesis

  Apple II source code, in the Forth language, for a commercial photosynthesis educational program

  appleiiforthsciencephotosynthesis
  2

• Aariq / li6400-data-wrangling

  the LI6400 portable photosynthesis meter exports data as a series of poorly formatted .xls files. If you've used "add remark" to indicate sample ID, these are shown as rows, not a separate column. This script extracts relevant data, and moves the sample ID information from remarks into a column.

  li-corphotosynthesisdata-wrangling
  Language:R 1

• ess-dive-community / essdive-leaf-gas-exchange

  READY TO USE. Documentation associated with the leaf-level gas exchange data and metadata reporting format for the ESS-DIVE repository

  data-standardmetadata-reportingmethods-metadataphotosynthesisreporting-format
  1

• Fabian11lrg / CobraPy-Model-Photosynthesis

  CobraPy - Chlorella vulgaris iFR947 GSM model - Programming Documentation - Python, pandas, Jupyter Notebooks

  jupyter-notebookmetabolic-modelsmetabolismpandas-dataframephotosynthesispython3light-absorptionchloroplast-genomemetabolic-engineering
  Language:Jupyter Notebook 1

• geocyclab / Phonosynthesis

  sensorphotosynthesispuredataundergrowth-plantscapture-devicebrightnessartsound
  1
• photosynthesis-scheme

  SeBassTian23 / photosynthesis-scheme

  Generate a scheme of the photosynthetic machinery for presentations or slides.

  photosynthesissvg
  Language:JavaScript 1

• SeBassTian23 / Visual-Phenomics-Python

  Import data output from Visual Phenomics into a DataFrame

  pandaspythonvisual-phenomicsdataframephotosynthesis
  Language:Python 1

• AndrePinheiroPT / ChloroplastCode

  Do you like plants? If yes, check out my program which tries simulate a chloroplast!

  biologyphotosynthesischloroplastplantschemistry
  Language:Python 0

• ARCHIMED-platform / archimed-platform.github.io

  The website for the ARCHIMED platform

  energyfspmlightmodeling-and-simulationphotosynthesisplantsradiationtranspirationtree-structuretrees
  Language:TeX 0

• bioatmosphere / UVAFMEVOC2017

  Scripts and Data underlying the 2017 Ecological Modelling paper on UVAFME-VOC.

  lightcanopycrownphotosynthesisindividual-based-modellingforestcommunityradiationdiffuse-radiationshaded-leafsunlit-leafuvafmeuvafme-voc
  Language:R 0

• lukaseamus / CSP

  Data and R code accompanying article 10.1111/gcb.16299 in Global Change Biology

  biogeographycarbon-fluxkelpcarbon-budget-uncertaintykelp-forestsclimate-changedecaydecompositiondegradationecophysiologyerosionphotosynthesiscarbon-nitrogenphotophysiologybiochemistryblue-carbonocean-warmingphenolslaminariadetritus
  Language:R 0

• lukaseamus / Laminaria-pigments

  Data and R code accompanying article 10.3354/meps13886 in Marine Ecology Progress Series.

  kelpmarine-ecologymarine-biologymarine-forestsphotosynthesispigmentsbiogeographyclimate-changerggplot2ggspectragaussian-peaknon-negative-least-squaresspectral-deconvolutionarticlemarine-plants
  Language:R 0

• MarkusLoew / FitAQ

  Yet another R package to analyse the light response of photosynthesis

  photosynthesisecophysiologylightlightresponsehyperbola
  Language:R 0

• nullptr3 / lsp-photodiode

  PAR Toolkit for LSP @ UCSC

  calibrationdiodephotosynthesis
  Language:Python 0

• Prikaziuk / Spe

  Flux partitioning: NEE -> GPP

  ecosystem-modelflux-partitioningphotosynthesis
  Language:HTML 0

• pwendering / ArabidopsisCoreModel

  Platform for further development of the Arabidopsis core metabolic model

  arabidopsis-thalianametabolic-modelphotosynthesisplant-metabolic-model
  Language:MATLAB 0

• pwendering / AraTModel

  Integration of temperature-dependent constraints into a metabolic model of Arabidopsis thaliana

  arabidopsis-thalianametabolic-modelphotosynthesistemperature
  Language:MATLAB 0

• bluegreen-labs / rpmodel

  An R implementation of the P-model (new fork).

  optimality-theoryphotosynthesisacclimation
  Language:R

• fonglh / photosynthesis-board-game

  hacktoberfestphotosynthesisboard-game-tracker
  Language:HTML

• HarveyBates / PARmeter

  Open-source PAR Meter

  photosynthesismeterquantifyradiationphotodiodeteensy

• MarkusLoew / GFS3000Import

  R package to import files generated by the WALZ GFS3000 photosynthesis system

  ecophysiologyphotosynthesis
  Language:R