There are 1 repository under scatac-seq topic.
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
Single-cell Transcriptome and Regulome Analysis Pipeline
STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data
Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.
Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).
SCAVENGE is a method to optimize the inference of functional and genetic associations to specific cells at single-cell resolution.
An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)
Tools for correcting single cell barcodes for various scATAC-seq techniques.
A Julia package for single cell and spatial data analysis
Repository to reproduce all analyses for Lareau*, Ludwig*, et al. 2020
Code related to Swanson, et. al. for TEA-seq, ICICLE-seq, and scATAC-seq data processing, analysis, and visualization
Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq
Single-cell transcriptomics and epigenomics unravel the role of monocytes in neuroblastoma bone marrow metastasis
scripts for manuscript 'benchmarking automated cell type annotation tools for single-cell ATAC-seq data'
R package for single-cell comparative regulatory analysis
A single-cell ATAC-seq simulation framework (R package)
It contains the functional code to analyze P2 scRNA-seq and scATAC-seq data.
CWL toolkit for single-cell sequencing data analysis
Epi-Impute: single-cell RNA-seq imputation via integration with single-cell ATAC-seq data
Tools for working with scATAC-seq fragment files
This repository is for male breast cancer scRNA-seq and scATAC-seq data processing and figure generation.
resVAE-ensemble: feature identification in single-cell data
Documenation Chromatin Accessibility Atlas
Single-Cell Data Analysis Tools
A crash course in scATAC-seq data processing