parashardhapola

scarf

Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.

nabo

Python library to perform memory efficient cross-sample cell mapping using single cell transciptomics (scRNA-Seq) data

pscheduler

Scheduler for launching jobs on multiple connected machines

cellradar

cellradar

sgtsnepi

Swift Neighbor Embedding of Sparse Stochastic Graphs

topacedo

AnaViz

A visual analysis of scRNA-Seq data

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

bartide

bimm05

demo repo

cellradar-backend

Backend server for CellRadar

cool_project

Testing Github for BIMM05

linux

Linux kernel source tree

SCALEX

Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space

scarf_vignettes

Tutorials and workflows for single-cell genomics data analysis using Scarf

scc-bioinfo-workshops-19

Material for worskhop series: 'Current topics in bioinformatics' in Lund Stem Cell Center. Organised by Research School in Stem Cell Biology & StemTherapy Bioinformatics Core Facility.

umap

Uniform Manifold Approximation and Projection