seurat-objects

There are 1 repository under seurat-objects topic.

zhanghao-njmu / SCP
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
single-cell seurat-objects single-cell-analysis single-cell-rna-seq scrna-pipeline scrna-seq scrna-seq-analysis seurat scanpy anndata single-cell-omics single-cell-sequencing shiny-apps shiny-app shinyapps single-cell-atac-seq single-cell-genomics single-cell-pipeline scatac-seq
Language:R 312
Dragonmasterx87 / Interactive-3D-Plotting-in-Seurat-3.0.0
This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
scrnaseq 3dtsne 3dpca seurat rna-seq-analysis umap 3dumap scrnaseq-data plotting seurat-objects
Language:R 109
kpatel427 / multiome_analysis
Scripts for sincle cell multiome analysis
seurat single-cell 10xgenomics seurat-objects single-cell-rna-seq single-cell-analysis single-cell-atac-seq
Language:R 9
JGASmits / AnanseSeurat
Single cell ANANSE Gene-regulatory-network analysis from Seurat objects
single-cell single-cell-atac-seq single-cell-rna-seq grn-analysis r seurat-objects
Language:R 8
LinhTranUCLA / scRNA_subsolid
R script built on Seurat objects to analyze 10X single-cell expression data
10x-genomics seurat-objects
Language:R 3
kullrich / scTEI
add any phylogenetically based transcriptome evolutionary index (TEI) to single-cell data objects
seurat seurat-objects evolution expression-profiles gene-expression gene-expression-profiles orthofinder phylostratigraphy scrna-seq-analysis sctei bioinformatics
Language:HTML 2
bixBeta / scRNA-WS24
Exercises for scRNA-seq Workshop TREX x BioHPC 2024.
harmony integration scrna-seq-analysis seurat seurat-objects
Language:Jupyter Notebook 1
fmbetul / bioinfotools
R package providing essential bioinformatics tools for the analysis and visualization of scRNA-seq data.
bioinformatics scrna-seq seurat-objects
Language:R 1
kreindata / simple-seurat
Simplifying Seurat data processing, clustering, and analysis
clustering clustering-analysis clustering-evaluation clustering-methods seurat seurat-objects
Language:R 1
scRNASeq
OlivierRaineteauSBRI / scRNASeq
Repo linked to our recent publication in Science Advances
biology-project brain scrna-pipeline scrna-seq scrna-seq-analysis scrna-seq-data scrnaseq-data scrnaseq-datasets spatial-data visium seurat seurat-objects spatial-analysis spatial-data-analysis spatial-transcriptomics transcriptomics
Language:HTML 1
dmalzl / yoRISC
A bit of code to interconvert objects between the Seurat and RISC environments for scRNA-seq data analysis
bioinformatics scrna-seq-analysis seurat-objects
Language:R 0
ngshasan / scRNA-marker-gene-Annotation
scRNA-marker-gene-Annotation.
scrna-seq-analysis seurat-objects visualization
Language:R 0
fmbetul / datacleaning
R toolkit designed to enhance the process of cleaning up and visualizing clusters within a Seurat object, commonly used for scRNA-seq data analysis.
bioinformatics bioinformatics-tool scrna-seq seurat-objects
Language:R
genepattern / Seurat.IntegrateData
GenePattern module which implements the batch correction algorithm within Seurat.
genepattern-module seurat seurat-objects batch-correction data-integration
Language:R
Kur1sutaru / wrapper_factory
bioinformatics cellranger python r seurat-objects single-cell cellqc
Language:Shell