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Dr. Barski Laboratory (Barski-lab)

Dr. Barski Laboratory

Barski-lab

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The Barski Lab researches epigenomics with a primary focus on the immune system. Our main research projects are designed to investigate epigenomic regulations

Location:Cincinnati, US

Home Page:https://www.cincinnatichildrens.org/research/divisions/a/allergy-immunology/labs/barski

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Dr. Barski Laboratory's repositories

cwl-airflow

Python package to extend Airflow functionality with CWL1.1 support

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biowardrobe

BioWardrobe: an integrated platform for analysis of epigenomics and transcriptomics data

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biowardrobe-airflow-analysis

BioWardrobe's backend rewritten for Apache Airflow.

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workflows

Community maintained workflows & tools (with examples)

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sc-seq-analysis

CWL toolkit for single-cell sequencing data analysis

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ga4gh_challenge

Workflow for GA4GH/DREAM challenge (phase 2)

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biowardrobe-ng

BioWardrobe-NG

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cwl-airflow-cli

Python package to add and check the status of the submitted to Airflow jobs

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incubator-airflow

Apache Airflow (Incubating)

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biowardrobe-airflow-plugins

Plugins for BioWardrobe Analysis

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Lenti-STARR

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ROSE

Fork from ROSE (https://bitbucket.org/young_computation/rose/src/master/annotation/)

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workflows_test

Conformance test for Barski-lab/workflows

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ALEA_CWL_workflow

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allele-project

Projects allele specific alignments to reference genome

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atdp

BioWardrobe ATDP

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barski-lab.github.io

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bharath90-meteorgeo

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biowardrobe-airflow-advanced

Advanced analysis from BioWardrobe

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biowardrobe-analysis

BioWardrobe basic and advanced analysis

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biowardrobe-ui

transition frontend ui for biowardrobe

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geep

INPUT: sam, bam, gff, gtf, tab-delimited table annotations

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get-certificate

Get certificate from https://letsencrypt.org/

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iaintersect

BioWardrobe Iaintersect.

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meteorgeo

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refgene-sort

Utility to sort refGene tab-delimited annotation files from Genome Browser (DB dumps)

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SatScript

Original SatScript.py from default R scripts (BioWardrobe)

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sra-interface

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visualization_plugins

Set of utilities for interactive data visualization

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workflows-datirium

CWL based Bioinformatics Workflows

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