regulatory-genomics

There are 0 repository under regulatory-genomics topic.

pinellolab / DNA-Diffusion
🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨
deep-learning diffusion-models diffusion-probabilistic-models generative-model genomics regulatory-genomics stable-diffusion
Language:Jupyter Notebook 341
ML4GLand / EUGENe
Elucidating the Utility of Genomic Elements with Neural Nets
deep-learning genomics python bioinformatics machine-learning regulatory-genomics
Language:Jupyter Notebook 59
meuleman / SynthSeqs
Data-driven design of context-specific regulatory elements
computational-biology pytorch synthetic-biology regulatory-genomics
Language:PostScript 10
evanseitz / squid-nn
surrogate quantitative interpretability for deepnets
attribution-methods explainable-ai model-interpretability motif-analysis regulatory-genomics surrogate-modelling
Language:Python 9
ML4GLand / SeqPro
Genomic sequence preprocessing toolkit
bioinformatics data-science machine-learning python regulatory-genomics
Language:Python 7
kundajelab / lsgkm-svr
lsgkm+gkmexplain with regression functionality. Builds off kundajelab/lsgkm (which has gkmexplain), which in turn builds off Dongwon-Lee/lsgkm (the original lsgkm repo)
gkm-svm regression svr regulatory-genomics
Language:C 5
evanseitz / squid-manuscript
squid repository for manuscript analysis
attribution-methods explainable-ai model-interpretability motif-analysis regulatory-genomics surrogate-modelling
Language:Python 2
kchu25 / MotifPvalue.jl
Threshold and p-value computations for Position Weight Matrices
transcription-factor-binding motif bioinformatics genomics pwm position-weight-matrix p-value motifs julia regulatory-genomics
Language:Julia 2
ML4GLand / SeqExplainer
Interpreting sequence-to-function machine learning models
interpretable-machine-learning bioinformatics deep-learning machine-learning python regulatory-genomics
Language:Jupyter Notebook 2
anilprakash94 / neur_ally
Deep learning model for non-coding regulatory variants
artificial-intelligence attention-network deep-learning genomics neurological noncoding-mutations regulatory-genomics variant-effect-prediction
Language:Python 1
dzyim / awesome-regulatory-genomics-papers
A curated list of regulatory genomics papers and resources.
awesome genetics lists regulatory-genomics epigenetics gene-expression functional-genomics
1
kchu25 / UnfoldCDL.jl
Deep Unfolded Convolutional Dictionary Learning for motif discovery.
deep-learning motif-discovery motif-finding convolutional-dictionary-learning regulatory-genomics machine-learning transcription-factor-binding-site interpretable-deep-learning interpretable-machine-learning deep-unfolding julia
Language:Julia 1
ML4GLand / SeqDatasets
Datasets for benchmarking, testing and developing in EUGENe
datasets machine-learning regulatory-genomics python
Language:Python 1
mireia-bioinfo / plotRegulome
R package for plotting Islet Regulome data.
plotting regulatory-genomics
Language:R 0
ML4GLand / tutorials
A set of tutorials for how to use all the tools in ML4GLand
machine-learning regulatory-genomics tutorial
Language:Jupyter Notebook 0
ML4GLand / use_cases
Repository documenting applications of the ML4GLand suite on published datasets
bioinformatics machine-learning regulatory-genomics use-cases
Language:Jupyter Notebook 0
ScienceMoo / DNA_structure_ML
Prediction of transcription factor binding based on DNA sequence
transcription-factor-binding regulatory-genomics
Language:Jupyter Notebook 0
biocompute-objects / bco-public-website
A Hugo-based deployment of biocomputeobject.org
standards ngs-analysis high-th workflows bioinformatics-pipeline biology regulatory-genomics hts-computations science-communication
Language:HTML
micheleantonazzi / bioinformatics-project
Analyze the active regulatory region of DNA using FFNN and CNN
bioinformatics cnn ffnn regulatory-genomics
Language:Python
ML4GLand / MotifData
Motif representation and analysis toolkit in Python
bioinformatics machine-learning regulatory-genomics python
Language:Jupyter Notebook