Danila's repositories
crispra_zga
Code for CRISPR activation screen with single-cell RNA-seq readout studying zygotic genome activation
single-cell-reading-list
A curated selection of blog posts on single-cell data analysis
mofaplus-shiny
Interactive MOFA+
anndata
Annotated data.
awesome-multi-omics
List of software packages for multi-omics analysis
bioconda-recipes
Conda recipes for the bioconda channel.
General
The official registry of general Julia packages
git_btm2017
Example used for the git course given at the EMBL btm 2017
h5xx-datasets
Demo datasets managed with Git LFS
MOFA
Multi-Omics Factor Analysis
mofax-dash
Interactive MOFA+ powered by mofax and Dash
mudata-feedstock
A conda-smithy repository for mudata.
muon-dockerfile
Dockerfile for muon
recommonmark
A markdown parser for docutils
singularity_training
SIngularity training
SoupX
R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
versioned-hdf5
Versioned HDF5