scrna

There are 1 repository under scrna topic.

berenslab / umi-normalization
Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Genome Biology
scrna single-cell-rna-seq single-cell-analysis umi-count umi-count-matrix normalization glm-pca negative-binomial-regression negative-binomial-model negative-binomial t-sne dimensionality-reduction gene-selection
Language:Jupyter Notebook 37
ucdavis-bioinformatics-training / 2017_2018-single-cell-RNA-sequencing-Workshop-UCD_UCB_UCSF
2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF
bioinformatics scrna workshop-materials
Language:HTML 35
klarman-cell-observatory / scPlot
Single cell interactive plotting tools
scrna-seq scrna visualization plot visualize-data transcriptomics
Language:Jupyter Notebook 24
bixBeta / TReX
RNA-seq, smRNA-seq, scRNA-seq & ATAC-seq workflows for @Cornell-Trex
10xgenomics rnaseq singlecell scrna shiny-apps shiny bash-script bash-scripting smallrna-seq smallrna mirdeep2 star seurat multiqc ggplot2
Language:Shell 4
raevskymichail / epi-impute
Epi-Impute: single-cell RNA-seq imputation via integration with single-cell ATAC-seq data
epigenetics imputation integration multiomics scatac-seq scrna single-cell chromatin
Language:R 3
rnabioco / scRNA-seq-Cell-Ref-Matrix
A reference matrix atlas of all single cell RNA-seq data on NCBI GEO for mice and humans
scrna rna-seq assign-identities ref-matrix
Language:R 3
ucdavis-bioinformatics-training / So-you-want-to-do-a-Single-Cell-RNA-seq-experiment
So you want to do a: Single Cell RNA-seq experiment
seminar scrna scrna-seq-analysis
2
ForwardStar / sctreeshap
An effective tool for single-cell RNA sequencing.
bioinformatics scrna scrna-seq-analysis
Language:Python 1
j-andrews7 / KnowledgeDump
Gotta keep the brain empty to learn more. This is my easily digestible backup.
bioinformatics cancer code-snippets genomics notes plotting python r scrna
1
raveancic / scRNAaltas_TNBC_mm
scrna-seq-analysis snakemake snakemake-pipeline cellranger singularity scrna pbs
Language:Python 1
ethan-mccarthy / scrnahelper
I've written a few functions that help me look through scRNA-seq data while working with Seurat.
scrna-seq seurat scrna-seq-analysis scrna
Language:R 0
ngshasan / single-cell-RNA-Seq-Data-Analysis-Methods
single-cell-RNA-Seq-Data-Analysis-Methods
scrna-seq scrna-seq-analysis scrna
0
Charlene717 / H5AD_PRJCA001063_PDAC
Creater: Charlene717
scrna charlene717 monocle3 top2a
Language:R
TomKellyGenetics / cellranger_clean
10x Cell Ranger Docker Image
docker cellranger single-cell scrna scrna-seq genomics umi
Language:Shell
TomKellyGenetics / UniverSCAFE
Docker container for combining UniverSC and SCAFE for 5' RNA-Seq data
single-cell scrna scrna-seq five-prime bioinformatics genomics cis-regulatory-elements
Language:Dockerfile