seqfish

There are 0 repository under seqfish topic.

CellScopes.jl
HaojiaWu / CellScopes.jl
A Julia package for single cell and spatial data analysis
bioinformatics data-viz julia-package single-cell-omics scrna-seq spatial-transcriptomics visium cartana xenium merfish scatac-seq seqfish starmap slideseq
Language:Julia 41
ankitbioinfo / nico_tutorial
A package that performs cell type annotations on single cell resolution of spatial transcriptomics data, find the niche interactions and covariation patterns between interacted cell types.
merfish niche-modelling nico scrna-seq scrna-seq-analysis scrna-seq-data scrnaseq seqfish spatial-transcriptomics niche-covariation
Language:Jupyter Notebook 6
neugun / EASEQ-FISH
A integrated analysis toolbox for 3D spatial transcriptome, enables highly accurate 3D registration for large volume images, and provides barcoding and decoding analysis for spatial transcriptome of thick tissue.
3d deep-learning lightsheet point-cloud registration seqfish spatial transcriptomics
Language:Jupyter Notebook 1

HaojiaWu / CellScopes.jl