scrna-pipeline

There are 0 repository under scrna-pipeline topic.

zhanghao-njmu / SCP
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
single-cell seurat-objects single-cell-analysis single-cell-rna-seq scrna-pipeline scrna-seq scrna-seq-analysis seurat scanpy anndata single-cell-omics single-cell-sequencing shiny-apps shiny-app shinyapps single-cell-atac-seq single-cell-genomics single-cell-pipeline scatac-seq
Language:R 301
AntonioDeFalco / SCEVAN
R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the malignant cells. It also infers the copy number profile of malignant cells, identifies subclonal structures and analyses the specific and shared alterations of each subpopulation.
aneuploidy clonal-analysis clonal-evolution copy-number-variation copynumber microenvironment scrna-pipeline scrna-seq scrna-seq-analysis single-cell subclonal-deconvolution subclone-identification tumor-classification tumor-evolution tumor-heterogeneity
Language:HTML 82
mckellardw / scMuscle
The Cornell Single-Cell Muscle Project (scMuscle) aims to collect, analyze and provide to the research community skeletal muscle transcriptomic data
scrna-seq-data scrna-seq-analysis scrna-pipeline
Language:HTML 16
luglilab / SP025_Analysis
Integration analysis with Scanpy and scRNAseq TME from blueprint
scanpy scrnaseq tutorial scrna-seq-analysis scrna-pipeline
Language:Jupyter Notebook 1
scRNASeq
OlivierRaineteauSBRI / scRNASeq
Repo linked to our recent publication in Science Advances
biology-project brain scrna-pipeline scrna-seq scrna-seq-analysis scrna-seq-data scrnaseq-data scrnaseq-datasets spatial-data visium seurat seurat-objects spatial-analysis spatial-data-analysis spatial-transcriptomics transcriptomics
Language:HTML 1