scrna-pipeline

There are 1 repository under scrna-pipeline topic.

zhanghao-njmu / SCP
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
anndata scanpy scatac-seq scrna-pipeline scrna-seq scrna-seq-analysis seurat seurat-objects shiny-app shiny-apps shinyapps single-cell single-cell-analysis single-cell-atac-seq single-cell-genomics single-cell-omics single-cell-pipeline single-cell-rna-seq single-cell-sequencing
Language:R 358
AntonioDeFalco / SCEVAN
R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the malignant cells. It also infers the copy number profile of malignant cells, identifies subclonal structures and analyses the specific and shared alterations of each subpopulation.
single-cell copy-number-variation copynumber subclonal-deconvolution subclone-identification clonal-evolution clonal-analysis microenvironment tumor-heterogeneity tumor-classification tumor-evolution scrna-seq-analysis scrna-pipeline scrna-seq aneuploidy
Language:HTML 90
mckellardw / scMuscle
The Cornell Single-Cell Muscle Project (scMuscle) aims to collect, analyze and provide to the research community skeletal muscle transcriptomic data
scrna-pipeline scrna-seq-analysis scrna-seq-data
Language:HTML 18
luglilab / NaCl-enhances-CD8-T-cell-effector-functions-in-cancer-immunotherapy
Integration analysis with Scanpy and scRNAseq TME from blueprint
scanpy scrna-pipeline scrna-seq-analysis scrnaseq tutorial
Language:Jupyter Notebook 2
scRNASeq
OlivierRaineteauSBRI / scRNASeq
Repo linked to our recent publication in Science Advances
biology-project brain scrna-pipeline scrna-seq scrna-seq-analysis scrna-seq-data scrnaseq-data scrnaseq-datasets spatial-data visium seurat seurat-objects spatial-analysis spatial-data-analysis spatial-transcriptomics transcriptomics
Language:HTML 1