spatial-proteomics

There are 0 repository under spatial-proteomics topic.

• alexisvdb / singleCellHaystack

  Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).

  bioinformaticscite-seqpseudotimerscatac-seqsingle-cellspatial-proteomicsspatial-transcriptomicstranscriptomics
  Language:R 78

• lgatto / pRoloc

  A unifying bioinformatics framework for organelle proteomics

  spatial-proteomicsbioconductorrproteomics-dataproteomicsvisualisation
  Language:R 15

• CellProfiling / HDCA-FetalLung-SpatialProteomics

  Custom software written for analysis of spatial proteomics data from fetal lung acquired in the HDCA project.

  imagej-macrosspatial-proteomicscell-atlashuman-development-dataset
  Language:Jupyter Notebook 2

• lgatto / QSep-manuscript

  Assessing sub-cellular resolution in spatial proteomics experiments

  proteomicsspatial-proteomicsprolocprolocdata
  Language:TeX 1

• MohamedOmar2020 / pca_TME

  Distinct mesenchymal cell states mediate prostate cancer progression

  prostate-cancersingle-cell-rna-seqspatial-proteomicsstromal-cellstumor-microenvironment
  Language:R 1

• marta-seq / PENGUIN

  Rapid and efficient image preprocessing pipeline for multiplexed spatial proteomics. Code to compare several techniques to denoise Imaging Mass cytometry

  denoising-imagesmass-cytometrymultiplexed-imagingspatial-proteomicsmultiplexed-imaging-analysis
  Language:Jupyter Notebook 0

• PixelgenTechnologies / adjusted-local-assortativity-paper

  Analysis code for the paper "Using Adjusted Local Assortativity with Molecular Pixelation unveils colocalization of membrane proteins with immunological significance"

  graph-theorylocal-assortativitymolecular-pixelationsingle-cellspatial-proteomicstopological-data-analysisuropod-formation
  Language:Jupyter Notebook 0

• deMirandaLab / PENGUIN

  Rapid and efficient image preprocessing pipeline for multiplexed spatial proteomics. Code to compare several techniques to denoise Imaging Mass cytometry

  denoising-imagesmass-cytometrymultiplexed-imagingmultiplexed-imaging-analysisspatial-proteomics
  Language:Jupyter Notebook

• UCLouvain-CBIO / LSTAT2340

  Traitement statistique de données omiques

  proteomicsbioconductormass-spectrometrytutorialspatial-proteomicsmsnbaseproloc
  Language:HTML