aertslab's repositories
scenicplus
SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.
pycisTopic
pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.
RcisTarget
RcisTarget: Transcription factor binding motif enrichment
single_cell_toolkit
Tools for correcting single cell barcodes for various scATAC-seq techniques.
nextcloud_share_url_downloader
Download files from and list content of NextCloud (password protected) share directly from the command line without needing a webbrowser.
popscle_helper_tools
Helper tools for popscle
pycistarget
pycistarget is a python module to perform motif enrichment analysis in sets of regions with different tools and identify high confidence TF cistromes.
scenicplus_analyses
SCENIC+ analyses
Bravo_et_al_Liver
Bravo_et_al_Liver
MendelCraft
The MendelCraft mod, introducing Mendelian genetics to the chickens of Minecraft!
scatac_fragment_tools
Tools for working with scATAC-seq fragment files