merfish

There are 0 repository under merfish topic.

MERlin
emanuega / MERlin
MERlin is an extensible analysis pipeline applied to decoding MERFISH data
cloud-computing image-processing merfish modular pipeline-framework segmentation transcriptomics
Language:Python 29
CellScopes.jl
HaojiaWu / CellScopes.jl
A Julia package for single cell and spatial data analysis
bioinformatics data-viz julia-package single-cell-omics scrna-seq spatial-transcriptomics visium cartana xenium merfish scatac-seq seqfish starmap slideseq
Language:Julia 17
lhqing / merfishing
Code for MERFISH analysis
merfish spatial imaging transcriptome merscope vizgen
Language:Jupyter Notebook 5
Kur1sutaru / ruichenlabcodes
Single cell ATAC and RNA seq data analysis
atac-seq bioinformatics-pipeline merfish single-cell-analysis
Language:Jupyter Notebook 2
ankitbioinfo / nico_tutorial
A package that performs cell type annotations on single cell resolution of spatial transcriptomics data, find the niche interactions and covariation patterns between interacted cell types.
merfish niche-covariation niche-modelling nico scrna-seq scrna-seq-analysis scrna-seq-data scrnaseq seqfish spatial-transcriptomics
Language:Jupyter Notebook 0
poloarol / snakemake-vizgen-cell-segmentation
A snakemake pipeline to perform cell segmentation on MERFISH spatial transcriptomics data.
cell-segmentation cellpose merfish spatial-transcriptomics vizgen watershed-algorithm vizgen-postprocessing single-cell-rna-seq
Language:Python 0