xenium

There are 0 repository under xenium topic.

• kharchenkolab / Baysor

  Bayesian Segmentation of Spatial Transcriptomics Data

  bayesiansegmentationspatial-transcriptomicsxenium
  Language:Julia 155
• CellScopes.jl

  HaojiaWu / CellScopes.jl

  A Julia package for single cell and spatial data analysis

  bioinformaticsdata-vizjulia-packagesingle-cell-omicsscrna-seqspatial-transcriptomicsvisiumcartanaxeniummerfishscatac-seqseqfishstarmapslideseq
  Language:Julia 29

• 10XGenomics / janesick_nature_comms_2023_companion

  Code companion to the publication "High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spatial and in situ analysis of FFPE tissue"

  insitu-dataregistrationvisiumvisualizationxenium
  Language:Jupyter Notebook 15

• MargoKapustina / XeniumSpatialAnalysis

  R-based Xenium Spatial Analysis Toolkit to assess gene expression gradients

  10xgenomicsspatial-transcriptomicsspatial-data-analysisxenium
  Language:R 5

• TheHumphreysLab / CellScopes.jl

  A Julia package for single cell and spatial data analysis

  cartanaspatial-transcriptomicsvisiumxeniumdata-vizjulia-packagescrna-seq-analysissingle-cell-omics
  Language:Julia 5

• phipsonlab / spaceMarker

  linear-modelsmarker-genesrspatial-transcriptomicsxenium
  Language:R 3

• alperoglu / ASTRID

  Tool for quick and standardized annotation of single cell transcriptomics data

  cell-annotationscrnatranscriptomicsxenium
  Language:Python 1