WangLab @ U of T

WangLab @ U of T's repositories

MedSAM

Segment Anything in Medical Images

Language:Jupyter NotebookApache-2.02344 17 231

scGPT

Language:Jupyter NotebookMIT891 37 180

U-Mamba

U-Mamba: Enhancing Long-range Dependency for Biomedical Image Segmentation

Language:PythonApache-2.0536 11 42

Graph-Mamba

Graph-Mamba: Towards Long-Range Graph Sequence Modelling with Selective State Spaces

Language:Python159 5 4

MedSAMSlicer

3D Slicer Plugin for Segment anything in medical images

Language:Python89 5 23

BIONIC

Biological Network Integration using Convolutions

Language:PythonMIT55 5 23

BLEEP

Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning

Language:PythonApache-2.049 5 6

clinical-camel

Language:PythonAGPL-3.046 9 6

DeepVelo

Language:PythonMIT36 7 6

AGILE

AGILE Platform: A Deep Learning-Powered Approach to Accelerate LNP Development for mRNA Delivery

Language:PythonMIT19 6 14

MEDIQA-Chat-2023

A repository for organizing our submission to the MEDIQA-Chat Tasks @ ACL-ClinicalNLP 2023

Language:PythonMIT19 7 9

OCAT

Language:PythonGPL-3.017 3 3

scFormer

Language:PythonMIT16 6 1

DPM-MedImgEnhance

Pre-trained Diffusion Models for Plug-and-Play Medical Image Enhancement

Language:Python14 4 1

MAESTER

Masked Autoencoder Guided Segmentation at Pixel Resolution

Language:PythonMIT12 4 1

CONCERTO

Carcinogenicity prediction with graph neural networks

Language:Jupyter NotebookMIT10 6 1

LabChat

Language:Jupyter NotebookAGPL-3.09 40

NanoMASK

mouse pet-ct image segmentation

Language:Python8 40

CongFu

CongFu: Conditional Graph Fusion for Drug Synergy Prediction

Language:Python5 4 2

simATAC

A single-cell ATAC-seq simulation framework (R package)

Language:RGPL-3.05 3 3

CellSeg-Transformers

Language:PythonApache-2.0400

IntegrAO

Integrate Any Omics: Towards genome-wide data integration for patient stratification

Language:Jupyter NotebookApache-2.04 30

SIMLR_PY

Python version of SIMLR

Language:PythonMIT3 20

gcn-drug-repurposing

Language:PythonMIT2 50

unicell

Universal cellular segmentation models

Language:PythonApache-2.02 40

rOCAT

Language:RNOASSERTION1 40

ViST-Echo

PD's thesis work towards a Video Swin Transformer for echocardiographic data.

Language:Python100

scHash

Language:Jupyter Notebook040

InsighTx

An Extreme Gradient Boosting (XGBoost) model using ex vivo lung perfusion data to classify lung transplant outcomes

Language:PythonGPL-3.0040

SAUNet_HCM_segmentation

SAUNet model implementation for cardiovascular medical image segmentation

Language:PythonBSD-3-Clause030