brettwhitty

Brett Whitty's repositories

bw-ca-tools

A small patch for Celera Assembler to add SLURM support

Language:ShellMIT2 20

icgc-dcmwg

Various utility scripts and ICGC DCC data specification templates / conversion tools written during early development work on the current ICGC DCC data portal (2.0)

Language:Perl2 30

bw-msu-sites

'Solanaceae Comparative Genomics Resource' and 'Potato Genome Project' public web portals. (Development code archive dump, 2011)

Language:JavaScript1 20

JCVI_HMP_metagenomic_pipeline

My CAMERA metagenomic annotation pipeline code as featured in "The JCVI standard operating procedure for annotating metagenomic shotgun sequencing data" and the "JCVI HMP metagenomic pipeline"

Language:Perl1 20

bcl_barcode_count

tally barcodes from Illumina sequencing machines

Language:Go000

bw-msu-tools

Archive of personal scripts repository from my various projects in the Buell Lab at MSU (Jan. 2008 - Apr. 2011)

Language:Perl020

Ergatis is a web-based utility that is used to create, run, and monitor reusable computational analysis pipelines; I was a developer on this project at The Institute for Genomic Research/J. Craig Venter Institute from 2005 to 2008.

Language:PerlNOASSERTION020

GoBCLy

POC code for specific streaming demultiplexing applications; contact author for more details.

Language:Go010

Damage-estimator

Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such as transposon based methods and Ultra II FS library preparation from NEB).

Language:PerlAGPL-3.0010