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GenomeTools genome analysis system.
Identify and find telomeres, or telomeric repeats in a genome.
A video player component for looping inner sections of video. Packaged as an npm library and cdn script.
A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region expansions (RREs) from short DNA reads
A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, and for haplotype inference.
Non-Repetitive Parts Calculator - Automated design and discovery of non-repetitive genetic parts for engineering stable genetic systems
A command line tool to try executing a shell command and retry if it fails. Optionally repeat with time intervals even if it succeeds. 🔁 https://www.npmjs.com/package/try-cli
SLURM-ready bash scripts to run the complete REPET pipeline
Some of the mapping and normalization scripts used in our NCB paper PMID:31209294
Identify and characterize repeat expansions in long read data
Find palindrome/inverted repeats in contigs/scaffolds
This is a tool for finding micro satellites in a chromosome.
Different approaches to calculate mappability and GC-rich tracks for danio rerio genomes
Project Job Insights (Python)