repeats

There are 0 repository under repeats topic.

genometools / genometools
GenomeTools genome analysis system.
genome bioinformatics gff3 genomics library annotation repeats python ruby lua c genometools toolkit
Language:C 281
tolkit / telomeric-identifier
Identify and find telomeres, or telomeric repeats in a genome.
genome rust telomere repeats telomeric telomeres bioinformatics
Language:Rust 92
lmdu / krait
An ultrafast tool for genome-wide survey of microsatellites and primer design
microsatellite tandem repeats primer
Language:HTML 35
smangul1 / rop
The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating from repeat sequences, recombinant B and T cell receptors, and microbial communities.
rna-seq-analysis t-cell-receptor circrna repeats alu immunoglobulin
Language:Shell 34
RKMlab / perf
PERF is an Exhaustive Repeat Finder
biopython fasta genome genomics microsatellites repeats sequence simple ssr tandem
Language:HTML 33
react-video-looper
lewhunt / react-video-looper
A video player component for looping inner sections of video. Packaged as an npm library and cdn script.
react video looper video-looper playback player video-player javascript repeats looping trimming react-video-player
Language:JavaScript 27
edgecase
LankyCyril / edgecase
A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, and for haplotype inference.
bioinformatics bioinformatics-pipeline genomics genomics-visualization haplotypes long-read-sequencing long-reads repeats telomeres
Language:Python 14
ayaanhossain / nrpcalc
Non-Repetitive Parts Calculator - Automated design and discovery of non-repetitive genetic parts for engineering stable genetic systems
genetic parts calculator non-repetitive design discovery algorithm stable systems nrp repeats vertex cover path finding synthetic-biology computational-biology synbio
Language:Python 6
lmdu / pytrf
a python package for finding tandem repeats from genomic sequences
microsatellite minisatellite ssr vntr tandem repeats str
Language:C 6
nf-cmgg / structural
A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region expansions (RREs) from short DNA reads
annotation cnv cram nextflow-pipeline ngs ngs-pipeline repeats short-reads structural-variation
Language:Nextflow 5
preethamvishy / try
A command line tool to try executing a shell command and retry if it fails. Optionally repeat with time intervals even if it succeeds. 🔁 https://www.npmjs.com/package/try-cli
cli node nodejs npm command-line command-line-tool command commandline commandline-interface retry repeat repeater repeats bash zsh zshrc zshell bash-script
Language:JavaScript 4
stajichlab / REPET-slurm
SLURM-ready bash scripts to run the complete REPET pipeline
genome-annotation repet slurm transposons transposable-elements repeats de-novo bioinformatics
Language:Shell 4
dancooke / tandem
A C++ tandem repeat finding library
tandem-repeats repeats string-matching
Language:C 3
sirusb / 2CLike_analysis
Some of the mapping and normalization scripts used in our NCB paper PMID:31209294
single-cell-rna-seq repeats drop-seq pluripotency
Language:Groovy 3
RevantOrg / Revant
De novo repeat inference from long reads
repeats microsatellites transposons de-novo-assembly pacbio-sequencing bioinformatics
Language:Java 2
caspargross / expander
Identify and characterize repeat expansions in long read data
bioinformatics-pipeline nanopore-sequencing pacbio-sequencing repeats
Language:R 1
jnarayan81 / huntPalindrome
Find palindrome/inverted repeats in contigs/scaffolds
palindrome inverted repeats
Language:HTML 1
BioinformaticsToolsmith / MsDetector
This is a tool for finding micro satellites in a chromosome.
bioinformatics cpp repeats satellite tool
0
dgavr / Zebrafish_mappability
Different approaches to calculate mappability and GC-rich tracks for danio rerio genomes
mappability repeats genome genome-browser alignability ngs gem bowtie tsslab zebrafish genome-annotation danio-rerio
Language:Python 0
fcunial / Revant
De novo repeat inference from long reads
repeats de-novo-assembly pacbio-data transposon microsatellite
Language:Java 0
rmhubley / coseg
Transposable Element Subfamily Detection
repeats transposon subfamilies
Language:C 0
jnarayan81 / Palindromer
Explore palindromes
palindrome genome contigs inverted repeats
Language:Perl
kelsonbatista / project-pyhton-job-insights
Project Job Insights (Python)
built-in-functions conditional exceptions files functions-python manipulate-data modules python python3 repeats tests
Language:Python

repeats

genometools / genometools

tolkit / telomeric-identifier

lmdu / krait

smangul1 / rop

RKMlab / perf

lewhunt / react-video-looper

LankyCyril / edgecase

ayaanhossain / nrpcalc

lmdu / pytrf

nf-cmgg / structural

preethamvishy / try

stajichlab / REPET-slurm

dancooke / tandem

sirusb / 2CLike_analysis

RevantOrg / Revant

caspargross / expander

jnarayan81 / huntPalindrome

BioinformaticsToolsmith / MsDetector

dgavr / Zebrafish_mappability

fcunial / Revant

rmhubley / coseg

jnarayan81 / Palindromer

kelsonbatista / project-pyhton-job-insights