jakechamblee / BPROM_to_GFF3_converter

Converts the string output of BPROM, a promoter prediction software tool, to the GFF3 file format. Used in a CPT Galaxy phage genomics workflow

BPROM to GFF3 converter

Uses regular expressions to extract data from the output of BPROM (a bacterial promoter prediction software tool) and converts it to the GFF3 file format.

For a converted example file, see 2022_1_23_bprom_as_gff3_AF083977.txt

Converts the following input:

To the following GFF3 output:

Run at the command line

python bprom_gff3_converter.py -f bprom_output_file_name/path.txt