promoter

There are 1 repository under promoter topic.

• MAGICS-LAB / DNABERT_2

  [ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome

  datasetdnadna-processingdna-traininggenomegenome-analysislanguage-modelcovidpromoterpromoter-analysispromoterssplicesplice-sitetranscription-factor-bindingtranscription-factor-binding-sitetranscription-factors
  Language:Shell 417

• BioinformaticsLabAtMUN / Promotech

  Machine-learning-based general bacterial promoter prediction tool.

  bacterial-genomesgenomepromoterpromoter-sequences
  Language:C 45

• spundhir / PARE

  PARE: a computational method to Predict Active Regulatory Elements

  chip-seqenhancerhistonendrnuclesosomepromoter
  Language:Shell 11

• ANSES-Ploufragan / SIGffRid

  Find two-boxes transcription factor binding sites (made for sigma factor binding sites) by comparing intergenic DNA regions upstream pairs of orthologous genes using statistical analyses

  transcription-factor-binding-sitesigma-factor-binding-siteorthologuesstatisticsdna-motifsrmespredictionpromotersigffridbmc-bioinformaticstwo-box-motifs
  Language:Perl 4

• 1cuigx / gene2promoter

  extract promoter sequence from A.thalian genome

  genomepromoter
  Language:Python 1

• jakechamblee / BPROM_to_GFF3_converter

  Converts the string output of BPROM, a promoter prediction software tool, to the GFF3 file format. Used in a CPT Galaxy phage genomics workflow

  promoterpredictionbioinformaticsgff3
  Language:Python 1

• Mrcuve0 / IOTA-sems-spammer-promoter

  A 2-in-1 script that leverages Pyota Libraries in order to spam the IOTA network (Tangle) or manually promote a transaction

  cryptocurrencyinternet-of-thingsiotapromoterspammertangle
  Language:Python 1

• adamyhe / elemeNT_core_promoter_pwms

  More accessible dump of the PWMs from ElemeNT (10.1080/21541264.2015.1067286)

  promoterpromoter-sequence-architecturessequence-motifscore-promoter-elementscore-promoter-motifstranscriptional-regulation
  Language:Python 0

• gorkemhacioglu / Instagram-Message-Bot

  This tool allows you to send predefined messages to target Instagram users. It sends your message to the targets every 3 minutes. You can use this tool to advertise your products to your potential customers. Just start the bot and lay down!

  instagraminstagram-botadvertiserbotchatplaywrightpromoterinstagram-message-bot
  0

• JAEYOONSUNG / DNMB

  Comprehensive in silico genomic analysis pipeline for domesticating non-model bacteria

  annotationcodongenomicsrbsspacertrnapromoter
  Language:R 0

• marsicoLab / PROmiRNA

  miRNA promoter annotation based on deepCAGE data

  mirnacagemachine-learningannotationcpppromoter
  Language:C++ 0