DTU Biosustain

shu

Multi-dimensional, trans-omics metabolic maps.

Maud

Enzyme models that take into account kinetics, allostery and thermodynamics

snakemake_UmetaFlow

Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake

pyOpenMS_UmetaFlow

Untargeted metabolomics workflow for data processing and analysis written in Jupyter notebooks (Python)

pseudobatch

The Pseudobatch transformation is a method to easy analysis of measurement from a fed-batch fermentation process. After transformation, the data can be analysed as if it was obtained from a batch fermentation process. The Pseudobatch transformation is especially useful for fed-batch processes where samples where drawn from the bioreactor.

git-tutorial

VS Code on Binder

Growth-coupling-suite

A constraint-based metabolic model-based workflow for computing and analyzing microbial strain design which couple a target reaction to growth

dsp_nextflow_training

Hands-on Nextflow training materials and information

pankb

The Pangenome Knowledge Base (PanKB) serves as an up-to-date resource for pangenomics research methods and the dissemination of results and currently offers basic pangenome characteristics and advanced pangenome analytics for 8 major biotech bacteria families.

dsp_notes

Public notes and hints of the Data Science Platform.

dsp_workshop_bash

Resources to be used in conjunction with the Bash workshop from the Data Science Platform

dsp_workshop_datavizR

Workshop Data Science

git-training-table-cool

A git training repository for table Cool

Alleleome

Tools to generate core- and panalleleomes.

benchling-resources

Benchling resources created at DTU Biosustain.

bgcflow

Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)

code-quality-check

dsp_nfcore-nanoseq

Nanopore demultiplexing, QC and alignment pipeline

dsp_nfcore_rnaseq

Guide to run nf-core RNA sequencing analysis pipeline in our Azure cloud infrastructure

dsp_nfcore_taxprofiler

Taxonomica profiling using nf-core/taxprofiler pipeline

dsp_notes_template_test

Example template testing for course

dsp_pandas

Organize pandas based functionality across projects.

ESS-Designs

git_training_henry_recording

Demo repo for git and GitHub live demo recording

notes_template

Notes template build on Sphinx, Myst parser and a template

pankb_data_prep

pankb_db

pankb_llm

An LLM-based pangenomics chatbot integrated into the PanKB website.

salb_imodulons

simplified_data_science_project_template

A template for data science projects. Simplified, based on datadriven.org's cookiecutter.