guokai8

scGSVA

scGSVA: Perform GSVA for single cell RNA seq

eoffice

Export and import graphics and tables to MicroSoft office

bioAnno

Build Annotation package by using information from KEGG, NCBI, Ensembl

rcellmarker

Identify cell type based on cell markers for single cell squencing

richR

Function Enrichment analysis and Network construction

o2plsda

Omics data integration with o2plsda

d2l-zh-

《动手学深度学习》：面向中文读者、能运行、可讨论。中英文版被70多个国家的500多所大学用于教学。

rcolors

Functions with r colors

scRNAseq-training

annotated_deep_learning_paper_implementations

🧑‍🏫 60 Implementations/tutorials of deep learning papers with side-by-side notes 📝; including transformers (original, xl, switch, feedback, vit, ...), optimizers (adam, adabelief, sophia, ...), gans(cyclegan, stylegan2, ...), 🎮 reinforcement learning (ppo, dqn), capsnet, distillation, ... 🧠

Cd8_T_cell

ChatGPT

🔮 ChatGPT Desktop Application (Mac, Windows and Linux)

ComputationalGenomicswithR

Computational Genomics with R

drug2cell

Gene group activity utility functions for Scanpy

excelerate-scRNAseq

Single RNA-seq data analysis with R (Finland, May, 2019)

Intro-to-R-flipped

KrakenTools

KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files

Ligand-Receptor-Pairs

Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.

Machine-Learning-Collection

A resource for learning about Machine learning & Deep Learning

pytorch-tutorial

PyTorch Tutorial for Deep Learning Researchers

R_for_Data_Science

Materials for teaching R and tidyverse

sceasy

A package to help convert different single-cell data formats to each other

scellplot

single cell and spatial transcriptomics plot

scRNA-seq_online

Spaghetti

Spaghetti: in situ analysis of 16S rRNA amplicons obtained by nanopore sequencing

TFAM

Mitochondrial Transcription Factor A Regulates FOXP3+ T Cell Mediated Maintenance of CD4+ T Cell Landscapes and Immunological Aging

tidygroup

Do analysis with group information

tidymass

tidymass

visium_heart

Spatial transcriptomics of heart tissue

workshop-scRNAseq

Single cell RNA sequencing analysis course