dmyersturnbull

tyrannosaurus

Generate beautifully modern (2021+) Python projects with seamless, GitHub-based CI/CD, Docker and Conda support, and out-of-the-box integration with >30 best-practices tools and standards.

science-notebook-template

🧪 A simple, elegant template for repositories with Jupyter notebooks supporting publications.

typed-dfs

Make Pandas DataFrames enforce definitions, self-organize, and correctly serialize in 18 formats.

mandos

Fetch pharmacological knowledge on chemical compounds and squeeze it into semantic triples. For analysis of chemical screens and training and evaluation of algorithms.

bioio

Micro-libraries for reading and writing genomic sequence data in various formats.

suretime

Get IANA timezones and fully resolved timestamps, even on Windows.

pocketutils

Everyday pocket-sized Python functions for you to copy or import.

service-it

Turn any Python function into a daemon that listens on a socket or port.

smartio

Python IO atomicity, temp files, checksums, and gz/zip/bz2/brotli/lz4/zstd compression

realized

Human-readable string serializations for many data types

sauron-legacy

augustus

An open source re-implementation of Caesar III

backend-test

FastAPI + PostgreSQL + polars + docker compose example

biojava

BioJava is an open-source project dedicated to providing a Java framework for processing biological data.

biozernike

Protein structure descriptors and alignment based on 3D Zernike moments.

cicd

CI/CD example

clana

CLANA is a toolkit for classifier analysis.

commitizen

Create committing rules for projects :rocket: auto bump versions :arrow_up: and auto changelog generation :open_file_folder:

commitizen-action

Commitizen github action to bump and create changelog

dmyersturnbull.github.io

Gaslit by a computer (in Hugo)

fastapi-sso

FastAPI plugin to enable SSO to most common providers (such as Facebook login, Google login and login via Microsoft Office 365 Account)

flake8-copyright

Adds copyright checks to flake8

hgvs

Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`

network-merge

Annotates edges with a rudimentary score and collapses cliques that consist of interologs.

protodomain-search

Search for subunits of tertiary psuedosymmetry that occur throughout fold space

rd_filters

A script to run structural alerts using the RDKit and ChEMBL

symmetry

Detect, analyze, and visualize protein symmetry

thornless

Safe, fast math eval.

useful_rdkit_utils

Some useful RDKit functions

whatthegist

Code that could have been GitHub gists instead.