bioperl

There are 1 repository under bioperl topic.

bioperl / bioperl-live
Core BioPerl 1.x code
bioinformatics bioperl perl toolkit
Language:Perl 289
lskatz / mashtree
:deciduous_tree: Create a tree using Mash distances
bioperl mash mash-distances tree
Language:Perl 139
cjfields / bioperl6
reimplementation of BioPerl classes in Raku (e.g. the language formerly known as Perl6)
bio bioinformatics bioperl perl6 raku rakudo
Language:Perl 6 48
aleimba / bac-genomics-scripts
Collection of scripts for bacterial genomics
perl bioinformatics genomics science microbial-genomics microbiology ngs sequencing annotation mlst blast unix bioperl scripts-collection opensource computational-biology
Language:Perl 42
tjparnell / biotoolbox
Tools for querying and analysis of genomic data
bioinformatics bioperl bigwig bam gff3 gtf fasta chip-seq rna-seq vcf annotations
Language:Perl 27
pseudogene / lava-dna
LAVA (LAMP Assay Versatile Analysis) is an extendable open-source Loop-mediated isothermal AMPlification (LAMP)
bioperl genetics lamp perl-scripts primer
Language:Perl 16
BFL-lab / Mfannot
MFannot is a program for the annotation of mitochondrial and plastid genomes
genome mitochondrial erpin hmmer blast muscle pipeline bioperl docker-container umac tbl2asn
Language:Perl 13
pseudogene / ora
Olfactory Receptor family Assigner (bioperl module)
bats bioinformatics bioperl olfactor ora receptor scientific
Language:Perl 4
ipb-jianyang / eCIS-screen
This repository contains the code used for screening putative extracellular Contractile Injection System (eCIS) loci from genomic sequences.
bioinformatics-pipeline bacterial-genomes bioperl hmmer
Language:Perl 2
tjparnell / HCI-Scripts
Miscellaneous bioinformatics scripts written by me for myself and other people
bioinformatics bioperl scripts
Language:Perl 2
cpolano / phytoassembly
Sequencing of unculturable plant pathogens
sequencing a5-pipeline bioperl bwa samtools blast contigs plant-pathogens phytopathology
Language:Shell 1
brettwhitty / bw-msu-tools
Archive of personal scripts repository from my various projects in the Buell Lab at MSU (Jan. 2008 - Apr. 2011)
perl bioinformatics genome-annotation genome-analysis genome-browser bioperl potato solanaceae snps orthologs comparative-genomics pangenome gff3 taxonomy hpc genomics sequence-analysis functional-annotation
Language:Perl 0
emmaewade / pangenome-workflow
A Snakemake workflow for microbial pangenomics analyses.
abyss bioperl pangenomics roary snakemake microbial-genomics
Language:Perl 0
sghignone / alpine-bioperl
Bioperl 1.7.7 containers based on alpine linux
container perl bioperl alpine-linux singularity-container docker-container singularity docker singularity-recipe docker-file
Language:Dockerfile 0
sophiagosselin / invader_sim
Simulates the evolution of intein invaded extein sequences based on simulated phylogenies and using a Monte-Carlo like process.
evolutionary-simulation inteins bioperl evolver monte-carlo paml perl r
Language:Perl 0
bretonics / Modules
Personal Perl modules
perl modules bioperl
Language:Perl
bevezetes_a_bioinformatikaba
gabboraron / bevezetes_a_bioinformatikaba
Bevezetés a bioionformatikába
bioinformatics bioinformatics-analysis bioinformatics-databases bioinformatics-tool bioperl biopython
Language:Jupyter Notebook

bioperl

bioperl / bioperl-live

lskatz / mashtree

cjfields / bioperl6

aleimba / bac-genomics-scripts

tjparnell / biotoolbox

pseudogene / lava-dna

BFL-lab / Mfannot

pseudogene / ora

ipb-jianyang / eCIS-screen

tjparnell / HCI-Scripts

cpolano / phytoassembly

brettwhitty / bw-msu-tools

emmaewade / pangenome-workflow

sghignone / alpine-bioperl

sophiagosselin / invader_sim

bretonics / Modules

gabboraron / bevezetes_a_bioinformatikaba