ena

There are 0 repository under ena topic.

• pysradb

  saketkc / pysradb

  Package for fetching metadata and downloading data from SRA/ENA/GEO

  bioinformaticsncbi-srancbi-sra-archivesratoolkitbioinformatics-pipelinesraena
  Language:Python 297

• nf-core / fetchngs

  Pipeline to fetch metadata and raw FastQ files from public databases

  workflownextflownf-corepipelinefastqsraenageodownloadsynapseddbj
  Language:Nextflow 125

• NBISweden / EMBLmyGFF3

  An efficient way to convert gff3 annotation files into EMBL format ready to submit.

  emblgff3convertersubmissionena
  Language:Python 58

• maximilianh / multiSub

  Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input directory and merges everything into a single output directory. Auto-detects input file formats. Can submit the results to multiple repositories from the command line.

  enafastagenbankgisaid-formatgisaid-uploadgisaid-uploadergisaid-xlsmeta-datancbincbi-ftpsars-cov-2sarscov2tsv
  Language:Python 34

• bebatut / enasearch

  A Python library for interacting with ENA's API

  apiapi-clientena
  Language:Python 21

• AmirHoseinSafari / Genotype-collector-and-SNP-dataset-creator

  Collecting Genotypes from ENA and make their SNPs

  snpgatksamtoolsenagenotypetuberculosisbwa-memfastq-filesisolatesnp-calling
  Language:Python 5

• BigDataBiology / ena-mirror

  Mirror selected ENA data locally

  bioinformaticsenapython
  Language:Python 3

• ELIXIR-Belgium / ENA-metadata-templates

  TSV and XLSX templates for submitting ENA objects (study, experiment, sample and run) using the ENA-upload-tool

  enametadatatemplatestsvxlsxena-uploadgenome-submission
  Language:Python 3

• hivlab / ena-upload

  Snakemake workflow to upload Sars-Cov-2 reads to ENA

  snakemake-workflowsars-cov-2korogeno-estcovid-19-estoniasnakemakesnakefileuploadena
  Language:Python 3

• ljchueca / ENA_submission_reads

  bioinformaticsenaillumina-sequencingraw-datasubmissioneuropean-nucleotide-archive
  Language:Shell 2

• tbcgit / omdctk

  OMD Curation Toolkit is a python package designed for the download and curation of metadata and fastq files of public omics datasets.

  curationenafastq-filesmetadataomicstoolkitbioinformaticsdatasets
  Language:Python 2

• wucc009 / Platelet_transcriptome_fastq_data_processing

  血小板转录组fastq数据处理

  geoenasralinuxaria2cbwaensemblefastpfastqchtseq-countrrpmstartpmtrimmomaticcircbankciri2fastq
  Language:Shell 2

• aldinka / test

  test

  angularangular4enaaldinasdasasdasdasdasdasdasdasdasdasdasdasdasdasdasdasdkajsdlkjasdkajlsdasdjlkajsdlkajsdlkajsdsddddsdkfjskdfjksdfjksdfj
  1

• annacprice / ena-fastq-fetch

  Query the ENA for different types of data and bulk download

  bioinformaticsenabulk-download
  Language:Python 1

• robiwangriff / ENA-submission-in-R

  R functions and workflow for submitting amplicon sequence data to the ENA.

  ampliconebienafastq-filesilluminametabarcodingmetagenomicsmixs-checklistsrreadssamplessubmissionsubmituploading-fastqs
  Language:R 1

• UofGMarkWong / TRANSGENE

  Source codes of API queries in R (made available together with datasets) of Medical Translation in the History of Modern Genomics (TRANSGENE)

  apiebienaepmcnetwork-analysispmidrscopusscopus-analysistransgene
  0

• abhi18av / ena-genomes-link-aggregator

  enapythonclojurebrowser-automationaria2c
  Language:Python

• ecthrwatch / www.dresser-un-fonctionnaire.com

  Dresser-un-fonctionnaire.com

  corruptionenafrancepistonenarquefonctionnaireglandeurparessesottise
  Language:HTML