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Lyons Lab @ University of Arizona (LyonsLab)

Lyons Lab @ University of Arizona

LyonsLab

Geek Repo

Location:Tucson, AZ

Home Page:www.genomevolution.org

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Lyons Lab @ University of Arizona's repositories

coge

CoGe (Comparative Genomics) Platform

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PhytoOracle

Distributive pipelines for phenomic data analysis

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StarBLAST

StarBLAST allows BLAST scalability by distributing jobs across computer systems.

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bioplot

Bioinformatic plots

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Biosphere_Class

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CoGe_plugin

JBrowse plugin for GenomeView in CoGe, also known as EPIC_CoGe

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Greentea

Greentea is CoGe's Usage Metrics frontend service

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JadeOolong

Virtual Reality

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jdot

A fully interactive HTML5 canvas-based dotplot/scatterplot viewer.

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cogeshell

command line utility for accessing the CoGe API

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swagger-ui

Swagger UI is a dependency-free collection of HTML, Javascript, and CSS assets that dynamically generate beautiful documentation from a Swagger-compliant API.

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Yerba

CoGe's Yerba is a distributed job management framework.

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AGRP

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Bismark-postprocessing

Perl scripts for the post-processing of Bismark bisulfite data

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Blacktea

CoGe D3 Analytics and Data Viz

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blast-matrix

Blast matrix used in the CoGe Blast tool

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cctools

The Cooperative Computing Tools (cctools) enable large scale distributed computations to harness hundreds to thousands of machines from clusters, clouds, and grids.

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coge-vagrant

A distributed development environment for the CoGe Platform.

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Teabag

CoGe's Utility Belt

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