Gautier RICHARD's repositories
mummer-ggplot
Nucmer from Mummer3 followed by ggplot for nicer and more customisable genome alignment plots.
HiCExplorer
HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.
esflu_wg2_phylodynamics
ESFLU WG2 Training School: Zero to Hero Phylogenetics and Phylodynamics
influenza_sequences_toolbox
A set of scripts and bioinformatic tools to process, handle and analyse Influenza viruses sequences
beast_tools
BEAST Tools - various scripts to help with BEAST Phylodynamic Analyses
bioconda-recipes
Conda recipes for the bioconda channel.
deepTools
Tools to process and analyze deep sequencing data.
HiCBrowser
Simple web browser to visualize HiC tracks
InversionsFinder
Snakemake-based pipeline to align multiple genomes and find large inversions.
mcclintock
Meta-pipeline to identify transposable element insertions using next generation sequencing data
pigie-2012-2022
Nextstrain Instance for the PIGIE European Swine Influenza A Virus Surveillance Compilation from 2012 to 2022
snakepipes
Customizable workflows based on snakemake and python for the analysis of NGS data
swIAV-H1av-France-2019-2022
H1av swIAV Evolution from 2019 to 2022
UpSetR
An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..