euxhenh

cellar

Interactive software tool for the assignment of cell types in single-cell studies.

ConstrainedKMeans

Constrained KMeans algorithm.

multiset-multicover

Multiset multicover using the extended greedy cover algorithm implemented in C++ and exposed to Python.

Truffle

Trajectory Inference of clinical data via Multi-commodity Flow

grinch

A library for differential expression and gene set enrichment analysis based on hydra and pydantic.

phenotype-cover

A package for biomarker selection based on multiset multicover and the cross-entropy-method.

category-theory

Notes, solved exercises, cheatsheet on category theory.

automl-decathlon-2022-eh

Fourth place submission to the AutoML Decathlon Competition 2022.

ML-Algorithms

Various ML algorithms implemented from scratch.

arch_installation

BinToGene

A tool for replacing promoter accessibility with a gene activity score.

Cluster_Ensembles

A package for combining multiple partitions into a consolidated clustering. The combinatorial optimization problem of obtaining such a consensus clustering is reformulated in terms of approximation algorithms for graph or hyper-graph partitioning.

CSES-Solutions

My solutions to the CSES Problem Set: https://cses.fi/

euxhenh.github.io

My personal page

hypergraph-leiden

Marlene

peasy

Plotting made easy.

phenotype-cover-experiments

This repository contains the code for experiments in "Multiset multicover methods for discriminative marker selection"

SenSet