Generic Model Organism Database Project

jbrowse-components

Source code for JBrowse 2, a modern React-based genome browser

Chado

the GMOD database schema

bam-js

Parse BAM and BAM index files in javascript for node and the browser

cram-js

Read CRAM v3 and v2 in node or in the browser

react-msaview

A multiple sequence alignment viewer

tabix-js

Read Tabix-indexed files, either with .tbi or .csi indexes, in node or the browser

gff-js

parse and format streams of GFF3, for node or webpack

indexedfasta-js

Read FASTA files indexed with .fai indexes. Also supports BGZIP+.gzi

bbi-js

Parser for bigwig and bigbed files

Apollo3

JBrowse 2 plugin for editing annotations on an Apollo server

generic-filehandle

use a subset of the NodeJS promise-based file handle API to access both local and remote files

jbrowse-plugin-template

Template to quickly start a new JBrowse 2 plugin

jbrowse-plugin-msaview

multiple sequence alignment browser plugin for JBrowse 2

binary-parser

A fork of binary-parser for usage in GMOD data parsers

jbrowse-plugin-quantseq

External JB2 plugin implementing a QuantitativeSequence track for displaying base-resolution models.

jbrowse-react-app-nextjs-demo

gmod.github.io

Repo to drive the "new" GMOD webpage

jbrowse-plugin-protein3d

3D protein structure visualizer in jbrowse 2 - WIP

jbrowse-react-app-cra5-demo

jbrowse-react-app-farm-demo

jbrowse-react-app-vite-demo

jbrowse-react-circular-genome-view-cra4-demo

jbrowse-react-circular-genome-view-cra5-demo

jbrowse-react-circular-genome-view-nextjs-demo

jbrowse-react-linear-genome-view-cra4-demo

jbrowse-react-linear-genome-view-cra5-demo

jbrowse-react-linear-genome-view-farm-demo

jbrowse-react-linear-genome-view-nextjs-demo

jbrowse-react-linear-genome-view-vite-demo

nclist-js

Read JBrowse v1 nested containment list feature stores from modern JS