hw538

cfDNAPro

cfDNAPro specializes in standardized and robust cfDNA fragmentomic analysis

ichorCNA

Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.

cfDNA

Analysis of epigenetic signals captured by fragmentation patterns of cell-free DNA

CNsignatures

This is data and code from our first paper on copy number signatures (Macintyre et al., Nat Gen, 2018).

cover-letter-latex

A cover letter template for a journal paper submission in Latex

cv

Guangchuang Yu's CV

data_analysis_visualization

Perl,R, mySQL scripts written for handling large-scale nucleotide data and clinical records

delfi_scripts

docs-cfdnapro

docs file for cfDNAPro R package

hw538.github.io

Personal Webpage

FRAGLE

ggplot2_themes

hands-on-llms

A practical workshop to how large language model systems work, and how to get up and running quickly.

latex-response-reviewers

Response to reviewers LaTeX template

latex_paper_template

An Overleaf template for an initial journal submission and a preprint

phd-thesis-template

A LaTeX / XeLaTeX / LuaLaTeX PhD thesis template for Cambridge University Engineering Department (CUED)

reproduce_lucas_wflow

rslurm

Submit R code to a Slurm cluster

tcga

Microbial analysis in TCGA data

TranscriptionFactorProfiling

Profiling of transcription factor binding sites in cell-free DNA