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PacBio's repositories

IsoSeq

Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads

BSD-3-Clause-Clear182 200

pb-metagenomics-tools

Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics

Language:HTMLBSD-3-Clause-Clear141 13 56

ccs

CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)

BSD-3-Clause-Clear109 240

trgt

Tandem repeat genotyping and visualization from PacBio HiFi data

Language:RustNOASSERTION92 30 30

barcoding

Lima - Demultiplex Barcoded PacBio Samples

Language:RBSD-3-Clause-Clear65 160

pb-CpG-tools

Collection of tools for the analysis of CpG data

BSD-3-Clause-Clear61 8 55

HiPhase

Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads

Language:RustNOASSERTION55 6 22

HiFi-16S-workflow

Nextflow pipeline to analyze PacBio HiFi full-length 16S data

Language:NextflowBSD-3-Clause-Clear47 6 39

HiFi-human-WGS-WDL

Language:WDLBSD-3-Clause-Clear45 15 14

pbcore

A Python library for reading and writing PacBio® data files

Language:PythonNOASSERTION38 26 47

HiFiCNV

Copy number variant caller and depth visualization utility for PacBio HiFi reads

Language:ShellBSD-3-Clause-Clear32 5 23

svpack

Structural variant (SV) analysis tools

Language:PythonBSD-3-Clause-Clear32 8 6

pbtk

PacBio BAM toolkit

BSD-3-Clause-Clear27 20

paraphase

HiFi-based caller for highly similar paralogous genes

Language:PythonBSD-3-Clause-Clear22 7 12

pbAA

21 110

hifihla

An HLA star-calling tool for PacBio HiFi data types

BSD-3-Clause-Clear18 9 2

pbfusion

Language:Python17 50

MethBat

A battery of methylation tools for PacBio HiFi reads

BSD-3-Clause-Clear16 5 1

HiFi-somatic-WDL

Tumor-normal variant calling workflow using HiFi reads

Language:WDLBSD-3-Clause-Clear10 15 1

HiFiTargetEnrichment

A repo for the Twist HiFi capture/snakemake workflow

Language:PythonBSD-3-Clause-Clear10 14 2

pangu

Language:PythonBSD-3-Clause-Clear10 50

pb-StarPhase

A phase-aware pharmacogenomic diplotyper for PacBio datasets

BSD-3-Clause-Clear7 7 2

trgt-denovo

De novo tandem repeat calling from PacBio HiFi data

Language:RustNOASSERTION6 6 1

HiFi-human-assembly-WDL

Language:WDLBSD-3-Clause-Clear5 12 1

skera

SKERA - Deconcat PacBio reads

BSD-3-Clause-Clear4 70

wdl-common

Language:WDLBSD-3-Clause-Clear4 90

wdl-dockerfiles

Language:PythonBSD-3-Clause-Clear3 10 2

HiFi-MAG-WDL

WDL workflow for metagenomics

Language:WDLBSD-3-Clause-Clear2 50

reference_genomes

Language:ShellBSD-3-Clause-Clear2 70

.github

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