biological-data

There are 2 repositories under biological-data topic.

• thackl / gggenomes

  A grammar of graphics for comparative genomics

  biological-datacomparative-genomicsgenomics-visualizationggplot-extensionggplot2
  Language:R 574

• MaxValue / Terpene-Profile-Parser-for-Cannabis-Strains

  Parser and database to index the terpene profile of different strains of Cannabis from online databases

  cannabisdata-scienceweb-crawler-pythonweb-crawlerweb-crawlingpython-3terpenesplantsbiological-data-analysisbiological-datascrapyhealthcannabis-strainscrawlerpythonbioinformaticsanalysisdatabasearomatherapyterpene-profile
  Language:Python 110

• tripal / tripal

  The Tripal package is a suite of Drupal modules for creating biological (genomic, genetic, breeding) websites. Visit the Tripal homepage at http://tripal.info for documentation, support, and other information. The Drupal project page is at http://drupal.org/project/tripal.

  tripaldrupalbiological-datacms-extensionchadohacktoberfesttripal-core
  Language:PHP 66

• raymonwu / Managing_Your_Biological_Data_with_Python_3

  <<Managing Your Biological Data with Python>> wirtten in Python 3

  pythonbiological-databioinformatics
  Language:Jupyter Notebook 25

• ropensci / worrms

  World Register of Marine Species R client

  taxonomymarine-speciesapi-wrapperbiologyrstatsrr-packagetaxizebiological-datafishmarine-biologyjerico-relevant
  Language:R 24

• biotorrents / gazelle

  BioTorrents.de’s version of Gazelle

  biologybiological-databiological-sequencesbittorrentbittorrent-trackerwebsiteapi
  Language:PHP 19

• LimaRAF / plantR

  An R Package for Managing Species Records from Biological Collections

  rdata-miningherbariumbiological-datadata-downloaderdata-cleaninggbifbiodiversityr-package
  Language:R 17

• ace19-dev / 2018-Data-Science-Bowl

  Kaggle Competitions: Find the nuclei in divergent images to advance medical discovery

  u-netkaggle-competitionnucleiimage-segmentationbiometricsbiological-data-analysisbiological-datadata-science-bowlmedical-image-analysiselatic-transform
  Language:Python 16

• vinisalazar / BioProv

  A provenance library for bioinformatics workflows 🧬 🔀 📝

  w3c-provbiopythonbiological-dataprovenancepythonprov
  Language:Python 13

• open-genes / open-genes-api

  Open Genes API provides access to research data collected for the genes associated with aging

  dockerapipythonfastapiagingbiological-databiological-databasebiologysciencegenetics
  Language:Python 9

• open-genes / open-genes-frontend

  Open Genes is a database of human genes associated with aging and lifespan.

  geneticsagingangularbiologybiological-databiological-databasescience
  Language:TypeScript 8

• aminkhod / Drug-Target_Interaction_prediction

  M.Sc-final-project

  bioinformaticsdrug-target-interactionsdrug-repurposingdata-sciencevalidationsurvey-analysispythonrmatlabbiological-data
  Language:Python 5

• biodosetools-team / biodosetools

  A tool to perform all different statistical tests and calculations needed by Biological Dosimetry Laboratories

  dosimetrybiological-datashiny-app
  Language:R 5

• biothings / biothings_explorer_web_old

  Web Interface for BioThings Explorer

  json-ldbiological-dataworkflowmyvariantmygenegenediseasedemobiological-entitieswebsitejavascriptpythonncats-translator
  Language:JavaScript 5

• gfbio / GFBio-portal-dev

  Source code of all GFBio components in the portal

  biological-dataliferay-portallongterm-storageresearch-data-management
  Language:CSS 5

• sokolmarek / hrv-correction

  Heart rate variability time series artifact correction

  ecghrvecg-signalmatlabbiological-datakubios
  Language:MATLAB 5

• OpenDataAnalytics / resonanteco

  Scalable Data Management for Biological and Environmental Data

  datamanagementgirderopensourcebiological-dataenvironmental-science
  Language:Vue 4

• cellrex / cellrex

  Platform for managing biological research data.

  bioinformaticsbiological-datadata-managementfastapilimspythonstreamlit
  Language:Python 2

• gfbio / gfbio-portal

  The GFBio Web Portal for Release

  biological-dataliferay-portallongterm-storageresearch-data-management
  Language:JavaScript 2

• mahossam / DNA-Transcription-Factor-Binding-Prediction

  DNA Transcription Factor Binding Prediction (Self-learning Project)

  dnadna-sequencesbiologybiological-datatranscription-factor-bindingcomputational-biologydeep-learning
  Language:Jupyter Notebook 2

• snailsnap / mollex

  computer-visionopencvbiological-data
  Language:C++ 2

• darioelias / TEGA

  TEGA (Tools for Evolutionary and Genetic Analysis) is a WEB-based standalone software (WEB-based platform) designed for the management of biological data, with emphasis on population genetics studies. This platform is free and any research group can install it in their institute, and modify it.

  geneticsbiological-datapopulation-geneticsmolecular-markers
  Language:Java 1

• fabbio00 / Biological_Data_Access_Guide_BDAG.ipynb

  This mini-guide contains some simple practical examples of data retrieval for main biological data archives sites. In addition, specific sections of the notebook have been devoted to collecting, summarizing, and clarifying the available documentation.

  apibioinformaticsbiological-datadata-retrieval
  Language:Jupyter Notebook 1

• James-2879 / microbiome_analysis

  Collection of tools to visualize microbiological abundance data for dissertation.

  bioinformaticsbiological-datadata-sciencedata-visualizationdockermicrobiomemicrobiome-analysisr-programmingenvironmental-microbiology
  Language:R 1

• miguel-porto / homem-luzula

  Field data collecting app for android, optimized for conducting biological inventories at high speed

  data-collectionandroid-appbotanyfieldworkbiological-dataspecies-distributionspeciesbiological-inventory
  Language:Java 1

• sankarshan-bhat / graph-clustering

  This repository provides classic clustering algorithms and various internal cluster quality validation metrics and also visualization capabilities to analyse the clustering results

  clustering-algorithmclustering-methodsunsupervised-learningcommunity-detectioncommunity-detection-algorithmbiological-networkscluster-analysisclustering-evaluationinternalclusteringdata-clusteringclustering-algorithmsbiological-datagraph-clusteringclustering-coefficient
  Language:Python 1

• shreyas-a-s / oneclick-website-deployer

  Bash script to install and setup a basic working drupal website with tripal module installed and activated.

  bioinformaticsdebiandrupallinuxtripalwebsitebiological-datacms-extension
  Language:Shell 1

• SmartBioTech / BioArInEO-API

  API for BioArInEO project

  annotationsontologydata-storagebiological-datasystems-biologydatabase-schema
  Language:PHP 1

• tripal / tripal_genetic

  Extends core Tripal with support focused on genotypic data, genetic markers, sequence variants, etc.

  biological-datachadogenetic-variationtripal-coretripal4
  1

• alecruces / MEBMedBio

  Utilizing cutting-edge optimization methods to detect anomalies in medical and biological datasets

  anomaly-detectionbiological-datamedical-application
  Language:Jupyter Notebook 0

• anilozdemir / Bee-DCD

  Repo for Bees outperform vertebrates in a delayed conditional learning task

  echo-state-networksesncomputational-modellingbiological-data-analysisbiological-networksbiological-data
  Language:Jupyter Notebook 0

• chriscant / mkdistmaps

  Command line tool to make species distribution maps from species records with GB or Irish grid references.

  biological-datageojsonirelandspecies-mapsunited-kingdom
  Language:JavaScript 0

• haradama / ofxBio

  openFrameworks addon for reading biological data

  addonbiological-databiologyc-plus-plusopenframeworksopenframeworks-addon
  0

• drostlab / biodbretrievr

  Retrieve and efficiently index entire biological sequence databases

  dataretrievaldatabasestoringbiological-databiological-sequences

• marceelrf / enrichHarmonizome

  Provide suport to access and download data through Hamonizome API

  bioinformaticsbioinformatics-pipelinebiological-databiology
  Language:R

• MarDZiuba / TecanParser

  This program processes the kinetic measurements produced by multiwell microplate readers of Tecan® TM and converts them into tidy tables and graphs.

  biological-datadataanalysislaboratory-equipmentscientific-researchlaboratorydevices
  Language:Python