biological-data

There are 3 repositories under biological-data topic.

thackl / gggenomes
A grammar of graphics for comparative genomics
comparative-genomics ggplot2 biological-data ggplot-extension genomics-visualization
Language:R 694
MaxValue / Terpene-Profile-Parser-for-Cannabis-Strains
Parser and database to index the terpene profile of different strains of Cannabis from online databases
analysis aromatherapy bioinformatics biological-data biological-data-analysis cannabis cannabis-strains crawler data-science database health plants python python-3 scrapy terpene-profile terpenes web-crawler web-crawler-python web-crawling
Language:Python 117
tripal / tripal
The Tripal package is a suite of Drupal modules for creating biological (genomic, genetic, breeding) websites. Visit the Tripal homepage at http://tripal.info for documentation, support, and other information. The Drupal project page is at http://drupal.org/project/tripal.
biological-data chado cms-extension drupal hacktoberfest tripal tripal-core
Language:PLpgSQL 69
raymonwu / Managing_Your_Biological_Data_with_Python_3
<<Managing Your Biological Data with Python>> wirtten in Python 3
python biological-data bioinformatics
Language:Jupyter Notebook 30
ropensci / worrms
World Register of Marine Species R client
api-wrapper biological-data biology fish jerico-relevant marine-biology marine-species r r-package rstats taxize taxonomy
Language:R 27
biotorrents / gazelle
BioTorrents.de’s version of Gazelle
api biological-data biological-sequences biology bittorrent bittorrent-tracker website
Language:PHP 24
LimaRAF / plantR
An R Package for Managing Species Records from Biological Collections
r data-mining herbarium biological-data data-downloader data-cleaning gbif biodiversity r-package
Language:R 19
ace19-dev / 2018-Data-Science-Bowl
Kaggle Competitions: Find the nuclei in divergent images to advance medical discovery
u-net kaggle-competition nuclei image-segmentation biometrics biological-data-analysis biological-data data-science-bowl medical-image-analysis elatic-transform
Language:Python 16
vinisalazar / BioProv
A provenance library for bioinformatics workflows 🧬 🔀 📝
w3c-prov biopython biological-data provenance python prov
Language:Python 14
open-genes / open-genes-frontend
Open Genes is a database of human genes associated with aging and lifespan.
genetics aging angular biology biological-data biological-database science
Language:TypeScript 10
open-genes / open-genes-api
Open Genes API provides access to research data collected for the genes associated with aging
docker api python fastapi aging biological-data biological-database biology science genetics
Language:Python 9
sokolmarek / hrv-correction
Heart rate variability time series artifact correction
ecg hrv ecg-signal matlab biological-data kubios
Language:MATLAB 8
aminkhod / Drug-Target_Interaction_prediction
M.Sc-final-project
bioinformatics drug-target-interactions drug-repurposing data-science validation survey-analysis python r matlab biological-data
Language:Python 5
biodosetools-team / biodosetools
A tool to perform all different statistical tests and calculations needed by Biological Dosimetry Laboratories
dosimetry biological-data shiny-app
Language:R 5
biothings / biothings_explorer_web_old
Web Interface for BioThings Explorer
json-ld biological-data workflow myvariant mygene gene disease demo biological-entities website javascript python ncats-translator
Language:JavaScript 5
gfbio / GFBio-portal-dev
Source code of all GFBio components in the portal
biological-data longterm-storage research-data-management liferay-portal
Language:CSS 5
cauliyang / DeepBioP
Deep Learning Processing Library for Biological Data
bioinformatics biological-data deep-learning
Language:Rust 4
OpenDataAnalytics / resonanteco
Scalable Data Management for Biological and Environmental Data
datamanagement girder opensource biological-data environmental-science
Language:Vue 4
cellrex / cellrex
Platform for managing biological research data.
bioinformatics biological-data data-management fastapi lims python streamlit
Language:Python 3
mahossam / DNA-Transcription-Factor-Binding-Prediction
DNA Transcription Factor Binding Prediction (Self-learning Project)
dna dna-sequences biology biological-data transcription-factor-binding computational-biology deep-learning
Language:Jupyter Notebook 3
darioelias / TEGA
TEGA (Tools for Evolutionary and Genetic Analysis) is a WEB-based standalone software (WEB-based platform) designed for the management of biological data, with emphasis on population genetics studies. This platform is free and any research group can install it in their institute, and modify it.
genetics biological-data population-genetics molecular-markers
Language:Java 2
elhariri78 / Evolution-of-humans-taset-for--clasification
This repository contains a dataset and models designed for classifying human evolutionary stages
anthropology biological-data classification data-science dataset deep-learning evolutionary-biology feature-engineering human-evolution machine-learning neural-networks random-forest supervised-learning
Language:Jupyter Notebook 2
gfbio / gfbio-portal
The GFBio Web Portal for Release
biological-data longterm-storage research-data-management liferay-portal
Language:JavaScript 2
MarDZiuba / TecanParser
This program processes the kinetic measurements produced by multiwell microplate readers of Tecan® TM and converts them into tidy tables and graphs.
biological-data dataanalysis laboratory-equipment scientific-research laboratorydevices
Language:Python 2
snailsnap / mollex
computer-vision opencv biological-data
Language:C++ 2
fabbio00 / Biological_Data_Access_Guide_BDAG.ipynb
This mini-guide contains some simple practical examples of data retrieval for main biological data archives sites. In addition, specific sections of the notebook have been devoted to collecting, summarizing, and clarifying the available documentation.
api bioinformatics biological-data data-retrieval
Language:Jupyter Notebook 1
James-2879 / microbiome_analysis
Collection of tools to visualize microbiological abundance data for dissertation.
bioinformatics biological-data data-science data-visualization docker microbiome microbiome-analysis r-programming environmental-microbiology
Language:R 1
sankarshan-bhat / graph-clustering
This repository provides classic clustering algorithms and various internal cluster quality validation metrics and also visualization capabilities to analyse the clustering results
clustering-algorithm clustering-methods unsupervised-learning community-detection community-detection-algorithm biological-networks cluster-analysis clustering-evaluation internal clustering data-clustering clustering-algorithms biological-data graph-clustering clustering-coefficient
Language:Python 1
shreyas-a-s / oneclick-website-deployer
Bash script to install and setup a basic working drupal website with tripal module installed and activated.
bioinformatics debian drupal linux tripal website biological-data cms-extension
Language:Shell 1
SmartBioTech / BioArInEO-API
API for BioArInEO project
annotations biological-data data-storage database-schema ontology systems-biology
Language:PHP 1
tripal / tripal_genetic
Extends core Tripal with support focused on genotypic data, genetic markers, sequence variants, etc.
biological-data chado genetic-variation tripal-core tripal4
1
alecruces / MEBMedBio
Utilizing cutting-edge optimization methods to detect anomalies in medical and biological datasets
anomaly-detection biological-data medical-application
Language:Jupyter Notebook 0
anilozdemir / Bee-DCD
Repo for Bees outperform vertebrates in a delayed conditional learning task
echo-state-networks esn computational-modelling biological-data-analysis biological-networks biological-data
Language:Jupyter Notebook 0
Code-JL / DNA-Sequence-Analyzer
A robust Python-based bioinformatics tool for comprehensive DNA sequence analysis and manipulation.
bioinformatics biological-data computational-biology data-analysis dna-analysis dna-sequencing fasta gc-content gene-detection genetics genomics molecular-biology motif-finding python python3 scientific-computing sequence-analysis sequence-manipulation bio-tools nucleotide-analysis
Language:Python 0
Albi1999 / Protein_Domain_Family_Characterization
Academic group project for the Biological Data Course of the MSc in Data Science @ UniPD 2024/2025
bioinformatics biological-data biology biopython pyhton
Language:Jupyter Notebook
marceelrf / enrichHarmonizome
Provide suport to access and download data through Hamonizome API
bioinformatics bioinformatics-pipeline biological-data biology
Language:R

biological-data

thackl / gggenomes

MaxValue / Terpene-Profile-Parser-for-Cannabis-Strains

tripal / tripal

raymonwu / Managing_Your_Biological_Data_with_Python_3

ropensci / worrms

biotorrents / gazelle

LimaRAF / plantR

ace19-dev / 2018-Data-Science-Bowl

vinisalazar / BioProv

open-genes / open-genes-frontend

open-genes / open-genes-api

sokolmarek / hrv-correction

aminkhod / Drug-Target_Interaction_prediction

biodosetools-team / biodosetools

biothings / biothings_explorer_web_old

gfbio / GFBio-portal-dev

cauliyang / DeepBioP

OpenDataAnalytics / resonanteco

cellrex / cellrex

mahossam / DNA-Transcription-Factor-Binding-Prediction

darioelias / TEGA

elhariri78 / Evolution-of-humans-taset-for--clasification

gfbio / gfbio-portal

MarDZiuba / TecanParser

snailsnap / mollex

fabbio00 / Biological_Data_Access_Guide_BDAG.ipynb

James-2879 / microbiome_analysis

sankarshan-bhat / graph-clustering

shreyas-a-s / oneclick-website-deployer

SmartBioTech / BioArInEO-API

tripal / tripal_genetic

alecruces / MEBMedBio

anilozdemir / Bee-DCD

Code-JL / DNA-Sequence-Analyzer

Albi1999 / Protein_Domain_Family_Characterization

marceelrf / enrichHarmonizome