epigenetic-data

There are 1 repository under epigenetic-data topic.

• Zhong-Lab-UCSD / Genomic-Interactive-Visualization-Engine

  Genomic Interactive Visualization Engine

  epigenetic-datagenomic-interactionsgenomics-visualizationjavascript
  Language:JavaScript 145

• epiviz / epiviz

  EpiViz is a scientific information visualization tool for genetic and epigenetic data, used to aid in the exploration and understanding of correlations between various genome features.

  epivizjavascriptepigenetic-datavisualizationbioinformatics
  Language:JavaScript 69

• QData / DeepChrome

  Bioinformatics16: DeepChrome: Deep-learning for predicting gene expression from histone modifications

  bioinformaticsdeep-neural-networksepigenetic-dataunderstanding-computation
  Language:Lua 62

• QData / AttentiveChrome

  NeurIPS17: [AttentiveChrome] Attend and Predict: Using Deep Attention Model to Understand Gene Regulation by Selective Attention on Chromatin

  deep-learningdeep-neural-networkepigenetic-datainterpretable-deep-learning
  Language:Lua 27

• guanjue / snapshot_pre

  Snapshot: a model-free method for clustering and visualizing epigenomic data

  atac-seq-signalcell-differentiationdata-clusteringdata-visualizationepigenetic-dataheatmap
  Language:C++ 3

• MuteJester / PyNCBI

  A Python API library for exploration and data retrieval from NCBI

  analyticsapibiologydatadatabasencbiepigenetic-dataepigeneticsmethylation
  Language:Python 3

• constantingoeldel / alphabeta-rs

  Tools for epigenetic data analysis

  alphabetaepigenetic-dataepigeneticsepigenomicsgenetics
  Language:Rust 2

• jawa23bio / cEpiReg

  Our comprehensive database integrates data from scRNA seq and sc-ATAC seq, identifying cis-regulatory elements (CREs) through comparison with ENCODE, Epimap, GWAS Catalog, and other datasets. By connecting transcription factors (TFs), CREs, and target genes, cEpiReg unveils hidden regulatory links crucial for understanding AD pathogenesis.

  atac-seqdatabaseepigenetic-dataeqtl-mappingscrna-seq-analysis
  Language:HTML 1

• sung / CSMD1.paper

  R codes of the figures from the Epigenetics CSMD1 paper

  epigenetic-dataepigeneticspublicationpublication-datasupporting-material
  Language:R 1

• N3ha-Rao / cEpiReg-Database

  Constructed a comprehensive database elucidating the intricate regulatory mechanisms underlying Alzheimer's Disease genetics, integrating scRNA-seq, scATAC-seq, CHIP-seq, CUT&RUN and eQTL data to identify cis-regulatory elements.

  atac-seqdatabase-developmentepigenetic-dataeqtl-mappingscrna-seq-analysis
  Language:HTML 0