There are 5 repositories under enrichment-analysis topic.
:bar_chart: A universal enrichment tool for interpreting omics data
🧬 gget enables efficient querying of genomic reference databases
Visualization of Functional Enrichment Result
Python package to perform enrichment analysis from omics data.
:books: Biomedical knowledge mining using GOSemSim and clusterProfiler
A standalone interactive application for detecting biological significance on a set of genes
Python implementation of Spatial Analysis of Functional Enrichment (SAFE)
Reactome Pathway Analysis
Enrichment Networks for Pathway Enrichment Analysis
A Python package for gene network analysis
This tutorial is created for educational purpose
A set of Shiny apps to provide interactive enrichment analysis and exploration of results.
A Snakemake workflow for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, pycisTarget and RcisTarget.
GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF
Microarray Analysis Pipeline in Python
A python package to explore pathways, diseases and drugs associated to a list of targets (genes, proteins, etc)
📊 An R package of RNA-seq workflow
ReMapEnrich is a R-software package to identify significantly enriched regions from ReMap catalogues or user defined catalogues. ReMapEnrich provide functions to import any in-house catalogue, automate and plot the enrichment analysis for genomic regions.
Library for KEGG pathway enrichment analysis
A comprehensive gene set function enrichment tool for multiple species.
mulea - an R package for enrichment analysis using various ontologies and empirical false discovery rate