wikipathways

There are 0 repository under wikipathways topic.

• cokelaer / bioservices

  Access to Biological Web Services from Python.

  keggunichemeutilschemblchebibiomodelsquickgouniprotwikipathwaysmusclepython
  Language:Python 286

• wikipathways / pywikipathways

  Python Client Package for WikiPathways

  biologypathway-enrichment-analysispythonwikipathways
  Language:Python 16

• wikipathways / wikipathways.org

  The main web site for the WikiPathways project.

  wikipathways
  Language:PHP 9

• wikipathways / GPML2RDF

  GPML2RDF converter

  javasemantic-webwikipathwayswikipathways-gpml-files
  Language:Java 4

• wikipathways / wikipathways-database

  WikiPathways Database

  bioinformaticsbiologypathway-analysispathway-enrichment-analysiswikipathways
  Language:Shell 4

• bio2bel / wikipathways

  Integration of pathway-related information from WikiPathways in BEL

  biological-expression-languagepathwayssystems-biologywikipathways
  Language:Python 3

• egonw / wikipathways-chromosomes

  Mapping WikiPathways to chromosomes

  chromosomesjavascriptwikipathways
  Language:HTML 3
• cinaR-genesets

  eonurk / cinaR-genesets

  Ready-to-use curated genesets for cinaR

  genesetswikipathwaysdiceenrichmentenrichment-analysispbmcgene-sets
  Language:R 3

• bioclipse / bioclipse.wikipathways

  Bioclipse plugins for WikiPathways and PathVisio

  blueobeliskwikipathways
  Language:Java 2

• dhimmel / pathways

  A compilation of pathway gene sets

  pathwayshumangeneswikipathwaysreactomepathway-interaction-databasepathway-commonstsvrephetiohetionet
  Language:Jupyter Notebook 2

• francescopatane96 / RNA-seq_Pipeline

  Deposited R scripts allow to execute a complete RNA-seq Pipeline, starting from sequence reads (FASTQ files) to mapping/annotate the genome using a reference, to counts the number of reads for every gene. when raw counts are obtained, DESeq2 module permits to find differentially expressed genes (DEG) and to perform statistical analysis. The last module of the project allows you to use clusterprofiler in order to perform ORA and GSEA analysis (over-representation analysis and gene set enrichment analysis) using GeneOntology (GO), disease ontology (DO), KEGG, reactome eg...

  bam-filesclusterprofilerdeseq2deseq2-analysisdifferentially-expressed-genesgene-set-enrichment-analysisgeneontologygseakeggorarreactomereactome-pathwayrna-seqrna-seq-analysisrna-seq-pipelinescriptwikipathwaysdiseaseontologyover-rapresentation-analysis
  Language:Jupyter Notebook 2

• wikipathways / nanopublications

  Project to convert content of WPRDF into nanopublications.

  nanopublicationspathwayswikipathways
  Language:Java 2

• wikipathways / reactome2gpml-converter

  Converts Reactome pathways to GPML format

  reactomepathwaywikipathwaysgpml
  Language:Java 2

• wikipathways / SARS-CoV-2-WikiPathways

  Temporary repository of RDF of selected pathways from WikiPathways, supporting the Wikidata bot.

  covid-19wikipathwayssars-cov-2
  Language:Java 2

• wikipathways / SPARQLQueries

  Queries for the WikiPathways SPARQL endpoint.

  rdfsparqlwikipathways
  Language:Python 2

• wikipathways / summit2018

  WikiPathways Summit Planning

  wikipathwayssummitpathway-analysispathway-enrichment-analysissystems-biologymetabolomics
  2

• BiGCAT-UM / PRA3006-SPARQL

  This ebook has information about life science databases, their SPARQL endpoints, what information they hold, what data models they use, and how to query those.

  aop-wikichembllife-sciencessparqlwikidatawikipathways
  Language:Groovy 1

• egonw / metawinterschool-bigcat

  #metawinterschool contribution by BiGCaT

  metabolomicspathvisiowikipathwaysbridgedb
  1

• wikipathways / old-rwikipathways

  R client package for the WikiPathways API.

  wikipathwaysr-packagebioinformaticsdatabase-access
  Language:R 1

• wikipathways / WikiPathways-SPARQL-book

  WikiPathways SPARQL Book

  sparqlwikipathways
  Language:Groovy 1

• egonw / knime-wikipathways

  KNIME nodes for WikiPathways.

  knimeworkflowbiological-data-analysispathway-analysiswikipathways
  Language:Java

• larsgw / gpml-rhea

  Collect chemical reactions from a GPML file and look for matching Rhea equations.

  wikipathwayswikipathways-gpml-filesgpmlpathwayschemistrybiology
  Language:JavaScript

• wikipathways / EuropePMCLinks

  Repository for code to create the Europe PMC external links

  alphaeuropepmcwikipathways
  Language:Groovy

• wikipathways / wp-rdf-api

  OpenAPI to extract information from WikiPathways.

  wikipathwayssparqlopenapigrlc