kegg-pathway
There are 1 repository under kegg-pathway topic.
iquasere / KEGGCharter
A tool for representing genomic potential and transcriptomic expression into KEGG pathways
Language:Python 44sk-sahu / sig-bio-shiny
A standalone interactive application for detecting biological significance on a set of genes
Language:R 40Pex2892 / PETAL
PETAL (ParallEl paThways AnaLyzer): a Python tool for deep biological pathway analysis
Language:Python 35- GeneSCFLanguage:Perl 21
decodebiology / geneSCF_inactive
GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF
Language:Perl 20draeger-lab / KEGGtranslator
A Java-based software for visualizing and translating the KEGG PATHWAY database. Conversion of KGML files into BioPAX, SBML, GraphML, GML, and various other formats.
Language:Java 17nasqar / ClusterProfShinyGSEA
A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries
Language:R 17transbioZI / BioMM
BioMM: Biological-informed Multi-stage Machine learning framework for phenotype prediction using omics data
Language:HTML 14harryhaller001 / keggtools
Library for KEGG pathway enrichment analysis
Language:Python 12A web-based application to perform Over-Representation Analysis (ORA) using clusterProfiler and shiny R libraries
Language:R 11greenelab / GEA_Community_Detection
Overrepresentation analysis for KEGG and PID pathways using community detection
Language:Python 7IbrahimElzahaby / MSc_Thesis
Computational protemics analysis of cancer cell-lines at the level of single-cells
Language:R 4klevdiamanti / metabolomicsDB
metabolomicsDB is a collection of three open-source command-line tools and an API. The tools create a meta-database of HMDB and ChEBI, while the API allows others to read the meta-database and use it on their own projects.
Language:C# 4JulieMarieCharmillon / kegg_parser
An HTML parser for "KEGG Mapper – Reconstruct Result" pages
Language:Python 2- Language:JavaScript 1
- Language:Jupyter Notebook 1
scheuermann-daniel / RNASeq_Analysis_Pasilla
DESeq2 Analysis and visualization of specific genes, notably Pasilla. Script aims to identify and filter differentially expressed genes and neatly store the results. The project also includes Gene Ontology (GO) and Kegg pathway analyses, providing insights into the biological processes affected by the Pasilla gene depletion.
duartebred / Mapping-Omics-datasets-on-KEGG-Metabolic-Pathways
Repository for the presentation of work developed by the student Duarte Velho for the UC Project, of the Master in Bioinformatics of the University of Minho, academic year 23-24.
Language:Python 0imprld01 / Kegg-Hidden-Loop-Search
This project interests in searching hidden loops, the cross-map loops, on KEGG database.
Language:Java 0Lachiemckbioinfo / KEGGChem
KEGG-Chem is a Python program designed to retrieve KEGG compounds and associated data using an input of KEGG orthologues or modules, and can also retrieve SMILES, SDF files, and more from PubChem.
Language:Python 0vsmicrogenomics / KEGG_Modules_Fetcher
A Python script for efficiently retrieving and organizing module-related data from the KEGG database, including entries, symbols, pathway IDs, and names.
Language:Python 0"Pathway_Feature_Identification.py" is a script for analyzing microbial genomic data, identifying antimicrobial resistance-associated pathways using KEGG data, and applying logistic regression for feature selection.
Language:Python 0- Language:C
Rabadash8820 / DotKEGG
A .NET wrapper for the Kyoto Encyclopedia of Genes and Genomes (KEGG) API.
Language:C#suqingdong / django_rest_kegg
Application of KEGG pathway for DRF
Language:Python
