There are 1 repository under kegg-pathway topic.
A tool for representing genomic potential and transcriptomic expression into KEGG pathways
A standalone interactive application for detecting biological significance on a set of genes
GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF
A Java-based software for visualizing and translating the KEGG PATHWAY database. Conversion of KGML files into BioPAX, SBML, GraphML, GML, and various other formats.
A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries
BioMM: Biological-informed Multi-stage Machine learning framework for phenotype prediction using omics data
Library for KEGG pathway enrichment analysis
A web-based application to perform Over-Representation Analysis (ORA) using clusterProfiler and shiny R libraries
Overrepresentation analysis for KEGG and PID pathways using community detection
Computational protemics analysis of cancer cell-lines at the level of single-cells
metabolomicsDB is a collection of three open-source command-line tools and an API. The tools create a meta-database of HMDB and ChEBI, while the API allows others to read the meta-database and use it on their own projects.
An HTML parser for "KEGG Mapper – Reconstruct Result" pages
DESeq2 Analysis and visualization of specific genes, notably Pasilla. Script aims to identify and filter differentially expressed genes and neatly store the results. The project also includes Gene Ontology (GO) and Kegg pathway analyses, providing insights into the biological processes affected by the Pasilla gene depletion.
Repository for the presentation of work developed by the student Duarte Velho for the UC Project, of the Master in Bioinformatics of the University of Minho, academic year 23-24.
This project interests in searching hidden loops, the cross-map loops, on KEGG database.
KEGG-Chem is a Python program designed to retrieve KEGG compounds and associated data using an input of KEGG orthologues or modules, and can also retrieve SMILES, SDF files, and more from PubChem.
A Python script for efficiently retrieving and organizing module-related data from the KEGG database, including entries, symbols, pathway IDs, and names.
"Pathway_Feature_Identification.py" is a script for analyzing microbial genomic data, identifying antimicrobial resistance-associated pathways using KEGG data, and applying logistic regression for feature selection.
A .NET wrapper for the Kyoto Encyclopedia of Genes and Genomes (KEGG) API.
Application of KEGG pathway for DRF