dvklopfenstein

DV Klopfenstein, PhD's repositories

PrincetonAlgorithms

Python implementations of selected Princeton Java Algorithms and Clients by Robert Sedgewick and Kevin Wayne

Language:PythonGPL-2.0155 110

pmidcite

Turbocharge a PubMed literature search using citation counts and data from the NIH

Language:PythonLGPL-3.018 4 10

ReactomePy

Explore biomolecular pathways in Reactome from the command-line or a Python script

Language:PythonGPL-3.015 10

goatools_simulation

Stochastic Gene Ontology Enrichment Analyses (GOEA) Simulations in manscript + Multiple-Test Correction Simulations

Language:PythonGPL-3.03 20

biocode

Various Biology Links

Language:PythonMIT2 10

enrichmentanalysis

Generic enrichment analysis

Language:PythonGPL-3.02 20

vim_git_etc

Common git workflows, vim & more

GPL-3.02 10

ascii_plots

Convenience function for quick and dirty data analysis

Language:Python100

bamnostic

a pure Python multi-version tolerant, runtime and OS-agnostic Binary Alignment Map (BAM) file parser and random access tool

Language:PythonBSD-3-Clause100

bcftools

This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib

Language:CNOASSERTION100

bioconda-recipes

Conda recipes for the bioconda channel.

Language:Shell1 10

cv_and_thesis

Curriculum Vitae and PhD thesis of D. V. Klopfenstein

Language:MakefileGPL-3.01 10

data_pa_gov

Work with the opendata from the Commonwealth of Pennsylvania

Language:PythonGPL-3.01 10

genanki

A Python 3 Library for Generating Anki Decks

Language:PythonMIT100

gossto

Gene Ontology Semantic Similarity Tool

Language:JavaNOASSERTION100

handson-ml2

A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in Python using Scikit-Learn, Keras and TensorFlow 2.

Apache-2.0100