WikiPathways's repositories
rWikiPathways
R package for WikiPathways API
pywikipathways
Python Client Package for WikiPathways
cytoscape-wikipathways-app
WikiPathways app for Cytoscape to open and access pathways from WikiPathways
wikipathways.github.io
GitHub pages for GPML-Repo
wikipathways-database
WikiPathways Database
nanopublications
Project to convert content of WPRDF into nanopublications.
SPARQLQueries
Queries for the WikiPathways SPARQL endpoint.
pfocr-pmcfigurebot
Query figures indexed by PubMed Central and collect metadata
reactome-gpml
Repository for GPML versions of Reactome pathways
tool_pathway_viewer
Pathway viewer and highlighter hosted on WMCS
wikipathways-api-client-java
Java library for WikiPathways webservice
wikipathways-data-release
Monthly data release
WikiPathwaysCurator
Unit tests that validate the WikiPathways content and support the curation of the knowledge base.
WpVocabularies
WikiPathways vocabularies for RDF representation
pfocr-database
Jekyll setup and database for the Pathway Figure OCR project
EuropePMCLinks
Repository for code to create the Europe PMC external links
gpml-sync-action
under dev
sandbox-wp-db
Playground for new GPML processing and curation
sandbox-wp.gh.io
Sandbox mirror of wikipathways.github.io
wikipathways-assets
Accessory files generated downstream of approved GPMLs
wikipathways-homology
Pathway database for homology-mapped content
wikipathways-pmcfigurebot
Query figures indexed by PubMed Central and collect metadata