clusterprofiler

There are 1 repository under clusterprofiler topic.

• YuLab-SMU / biomedical-knowledge-mining-book

  :books: Biomedical knowledge mining using GOSemSim and clusterProfiler

  clusterprofilerdisease-ontologyenrichment-analysisgene-ontologygosemsimmedical-subject-headingssemantic-similarity
  Language:TeX 73

• raymondkiu / R-scripts-graphing-statistics

  My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq

  barplotshierbapsheatmapssleuthggplot2rhierbapsdeseq2heatmapvolcanoplotsdiversityrnaseqrarecurveclusterprofiler
  Language:R 10

• ycl6 / GO-Enrichment-Analysis-Demo

  Working Demo on GO Enrichment Analysis using topGO, clusterProfiler and Enrichr/enrichR. Visit repo website for HTML output

  enrichment-analysistopgoclusterprofilerbioinformaticsenrichr
  Language:R 4

• francescopatane96 / RNA-seq_Pipeline

  Deposited R scripts allow to execute a complete RNA-seq Pipeline, starting from sequence reads (FASTQ files) to mapping/annotate the genome using a reference, to counts the number of reads for every gene. when raw counts are obtained, DESeq2 module permits to find differentially expressed genes (DEG) and to perform statistical analysis. The last module of the project allows you to use clusterprofiler in order to perform ORA and GSEA analysis (over-representation analysis and gene set enrichment analysis) using GeneOntology (GO), disease ontology (DO), KEGG, reactome eg...

  bam-filesclusterprofilerdeseq2deseq2-analysisdifferentially-expressed-genesgene-set-enrichment-analysisgeneontologygseakeggorarreactomereactome-pathwayrna-seqrna-seq-analysisrna-seq-pipelinescriptwikipathwaysdiseaseontologyover-rapresentation-analysis
  Language:Jupyter Notebook 2

• albertme0308 / GSApp

  GSApp Pathway Analysis

  clusterprofilerenrichment-analysisgseaorapathway-analysisshinyspia
  Language:HTML 1
• cpbnplot

  noriakis / cpbnplot

  Bayesian network plot for the enrichment analysis results

  bayesiangenenetworkclusterprofilervisualization
  Language:Jupyter Notebook 1

• tpurcell0122github / Trade-Ahead

  An investment advisory firm needs to segment stock offerings so they may offer their customers understandable investment options.

  clusteringclusterprofilercophenetic-distancedendrogramselbow-plothierarchical-clusteringk-means-clusteringsegmenting-and-clusteringsilhouette-method
  0