clusterprofiler

There are 1 repository under clusterprofiler topic.

• YuLab-SMU / biomedical-knowledge-mining-book

  :books: Biomedical knowledge mining using GOSemSim and clusterProfiler

  gene-ontologysemantic-similarityenrichment-analysisdisease-ontologymedical-subject-headingsclusterprofilergosemsim
  Language:TeX 80

• raymondkiu / R-scripts-graphing-statistics

  My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq

  barplotshierbapsheatmapssleuthggplot2rhierbapsdeseq2heatmapvolcanoplotsdiversityrnaseqrarecurveclusterprofiler
  Language:R 12

• ycl6 / GO-Enrichment-Analysis-Demo

  Working Demo on GO Enrichment Analysis using topGO, clusterProfiler and Enrichr/enrichR. Visit repo website for HTML output

  enrichment-analysistopgoclusterprofilerbioinformaticsenrichr
  Language:R 4

• francescopatane96 / RNA-seq_Pipeline

  Deposited R scripts allow to execute a complete RNA-seq Pipeline, starting from sequence reads (FASTQ files) to mapping/annotate the genome using a reference, to counts the number of reads for every gene. when raw counts are obtained, DESeq2 module permits to find differentially expressed genes (DEG) and to perform statistical analysis. The last module of the project allows you to use clusterprofiler in order to perform ORA and GSEA analysis (over-representation analysis and gene set enrichment analysis) using GeneOntology (GO), disease ontology (DO), KEGG, reactome eg...

  bam-filesclusterprofilerdeseq2deseq2-analysisdifferentially-expressed-genesgene-set-enrichment-analysisgeneontologygseakeggorarreactomereactome-pathwayrna-seqrna-seq-analysisrna-seq-pipelinescriptwikipathwaysdiseaseontologyover-rapresentation-analysis
  Language:Jupyter Notebook 2

• albertme0308 / GSApp

  GSApp Pathway Analysis

  clusterprofilerenrichment-analysisgseaorapathway-analysisshinyspia
  Language:HTML 1
• cpbnplot

  noriakis / cpbnplot

  Bayesian network plot for the enrichment analysis results

  bayesiangenenetworkclusterprofilervisualization
  Language:Jupyter Notebook 1

• tpurcell0122github / Trade-Ahead

  An investment advisory firm needs to segment stock offerings so they may offer their customers understandable investment options.

  clusteringclusterprofilercophenetic-distancedendrogramselbow-plothierarchical-clusteringk-means-clusteringsegmenting-and-clusteringsilhouette-method
  0

• andreyhgl / containeR-gene-ontology

  Singularity container for running gene ontology anlaysis

  clusterprofilergene-ontologykeggbiomart

• mailtopurnimams-29 / Project_UnsupervisedLearning

  Project Goal: To segment credit card customers based on spending patterns and interactions for targeted marketing. Role: Conducted EDA, applied clustering algorithms, reduced dimensions, and profiled segments. Helped identify key customer segments, enabling the bank to tailor services and improve customer engagement

  clusterprofilerhierarchical-clusteringkmeans-clusteringpca-analysis
  Language:Jupyter Notebook

• nathadriele / rna_seq_dac_project

  Este projeto teste, analisa perfis de expressão gênica de dados de RNA-Seq para identificar genes diferencialmente expressos em pacientes com Doença Arterial Coronariana (DAC) usando R.

  analysis-reportclusterprofilercoronary-heart-diseasedeseq2-analysisdplyreda-visualizationr-languager-packagesr-scriptrna-seqrna-seq-analysisscript
  Language:R