rephetio

There are 0 repository under rephetio topic.

• hetio / hetionet

  Hetionet: an integrative network of disease

  hetionetrephetionetworkneo4jhetnetdrug-repurposingdata-integration
  Language:HTML 240

• dhimmel / drugbank

  User-friendly extensions of the DrugBank database

  rephetiodrugbankdrugscompoundsterminology
  Language:HTML 169

• dhimmel / obonet

  OBO-formatted ontologies → networkx (Python 3)

  oboontologyparsernetworkxpythonnetworkrephetioobo-formatted-ontologiesobo-files
  Language:Python 134

• hetio / hetnetpy

  Hetnets in Python (relocated from dhimmel/hetio)

  edge-predictiongraphheterogeneous-networkhetnetpythonrephetio
  Language:Python 89

• dhimmel / integrate

  Scripts and resources to create Hetionet v1.0, a heterogeneous network for drug repurposing

  rephetioneo4jdata-integrationnetworkhetnetdrug-repurposinghetionet
  Language:Jupyter Notebook 29

• dhimmel / lincs

  Library of Integrated Cellular Signatures L1000

  lincsl1000gene-expressionrephetio
  Language:Jupyter Notebook 25

• dhimmel / clintrials

  Cataloging pharmacotherapies in clinical trial from ClinicalTrials.gov

  clinical-trialsgovdrugdiseaseindicationsrephetiodrug-repurposing
  Language:Jupyter Notebook 24

• dhimmel / disease-ontology

  User-friendly extensions to the Disease Ontology

  rephetiodisease-ontologydo-slimhetionetontologyhuman
  Language:Web Ontology Language 20

• dhimmel / SIDER4

  Processing SIDER 4.1: the side effect resource

  rephetioside-effectdrugcompoundsidersider4
  Language:Jupyter Notebook 19

• dhimmel / hsdn

  Analysis of the human symptoms–disease network

  rephetiomedlinehsdndiseasesymptomsnetwork
  Language:HTML 18

• hetio / medline

  Computing term cooccurrence in MEDLINE

  rephetiohetionetmedlinepubmedcooccurrencesymptomsdiseasesanatomytext-miningliterature
  Language:Jupyter Notebook 16

• dhimmel / indications

  Processing high-throughput drug indication resources.

  rephetiopharmacotherapydbindicationsdrug-repurposingmedicine
  Language:HTML 15

• dhimmel / disgenet

  Processing the DisGeNET database of disease–gene association

  disgenetdisease-gene-associationdiseasegenesassociationsrephetiohetionet
  Language:Jupyter Notebook 9

• dhimmel / mesh

  User-friendly extensions to MeSH

  meshmedical-subject-headingsrephetiohetionetontology
  Language:Jupyter Notebook 9

• dhimmel / bindingdb

  Process BindingDB

  bindingdbproteincompounddrugbindingrephetiohetionettsv
  Language:HTML 8

• dhimmel / gene-ontology

  User-friendly Gene Ontology annotations

  gene-ontologygithub-pagesgenesontologyrephetioannotations
  Language:Jupyter Notebook 7

• dhimmel / rephetio

  Miscellaneous Content for Project Rephetio to repurpose drugs

  rephetiothinklabdrug-repurposingdiseasemiscellaneous
  Language:Jupyter Notebook 6

• dhimmel / rephetio-manuscript

  Markdown source for the Project Rephetio Manuscript https://doi.org/10.7554/eLife.26726

  manubotmanuscriptmarkdownrephetio
  Language:HTML 6

• hetio / het.io

  Source code for https://het.io website

  github-pageshetiohetionethetnetrephetiowebsite
  Language:HTML 6

• dhimmel / drugcentral

  Converting DrugCentral data to Rephetio identifiers

  drugcentraldatatsvdrugsdiseasecompoundsindicationsmappingsrephetiopharmacologic-classhetionet
  Language:Jupyter Notebook 4

• dhimmel / learn

  Machine learning and feature extraction for the Rephetio project

  rephetiomachine-learninglogistic-regressionedge-predictiondrug-repurposing
  Language:Jupyter Notebook 4

• dhimmel / uniprot

  Extract uniprot mappings to other vocabularies

  rephetiouniprotmappingtsvproteinsterminology
  4

• dhimmel / diseases

  Processing the DISEASES database

  diseasesgenediseaseassociationtext-miningrephetiohetionet
  Language:Jupyter Notebook 3

• dhimmel / entrez-gene

  Processing the human Entrez Gene subset

  entrez-generephetiohetionethumangenesterminology
  Language:Jupyter Notebook 3

• dhimmel / gtex

  GTEx Expression Analysis

  gtexrephetiogene-expression
  3

• dhimmel / ppi

  Compiling human protein–protein interactions

  ppigenesproteinsprotein-interactionrephetiohetionet
  Language:Jupyter Notebook 3

• dhimmel / bgee

  Extracting anatomy-specific gene expression in humans from Bgee

  bgeegene-expressiontranscriptomicstsvanatomygenerephetiohetionet
  Language:Jupyter Notebook 2

• dhimmel / gwas-catalog

  Extracting disease-gene associations from the GWAS Catalog

  gwasgwas-catalogsnpgenediseasedata-processingrephetiohetionet
  Language:Jupyter Notebook 2

• dhimmel / het.io-rep-data

  Data from Project Rephetio for the het.io website

  rephetiodatabrowserdatatablesdrug-repurposing
  Language:Jupyter Notebook 2

• dhimmel / pathways

  A compilation of pathway gene sets

  pathwayshumangeneswikipathwaysreactomepathway-interaction-databasepathway-commonstsvrephetiohetionet
  Language:Jupyter Notebook 2

• dhimmel / stargeo

  Generating expression signatures for disease using STARGEO

  stargeogene-expressionmeta-analysisrephetiohetionetmicroarray-datadiseasestranscriptomics
  Language:Jupyter Notebook 2

• dhimmel / tissues

  Gene–Tissue relationships from the TISSUES database

  tissuesgenesanatomyrephetiohetionet
  2

• dhimmel / doaf

  Processing data from DOAF, the Disease Ontology Annotation Framework

  doafdiseasesgenesassociationgenerifrephetiohetionet
  Language:Jupyter Notebook 1

• dhimmel / het.io-rep-guides

  Neo4j Browser Guides for Project Rephetio Predictions

  rephetioneo4j-guidesneo4jguidesasciidochetionet
  Language:Jupyter Notebook 1

• dhimmel / uberon

  User-friendly anatomical structures data from the Uberon Ontology

  uberonontologyrephetiohetionetanatomytsv
  Language:Jupyter Notebook 1

• hetio / repurpose-frontend

  Frontend for https://het.io/repurpose/

  frontendhetioreactrephetio
  Language:JavaScript 1