signaling-pathways
There are 1 repository under signaling-pathways topic.
osh / gr-eventstream
gr-eventstream is a set of GNU Radio blocks for creating precisely timed events and either inserting them into, or extracting them from normal data-streams precisely. It allows for the definition of high speed time-synchronous c++ burst event handlers, as well as bridging to standard GNU Radio Async PDU messages with precise timing easily.
Language:C++ 44- Language:Python 19
- Language:Python 17
loucerac / drexml
(DRExM³L) Drug REpurposing using eXplainable Machine Learning and Mechanistic Models of signal transduction
Language:Python 9arnaudporet / pathrider
Finding paths of interest in networks
Language:Go 3Converting KGML encoded KEGG pathways to the SIF file format
Language:Python 2Converting SBGN encoded pathways to the SIF file format
Language:Python 2- Language:MATLAB 2
okadalabipr / cancer_modeling
Modeling signaling networks in cancer
Language:Python 2dweth / mcsnac
Code for analysis of single cell signaling network kinetics from flow cytometry (CyTOF) datasets
Language:Fortran 1raghavagps / nfkbin
A computational approach to predict the NF-kB inhibitors
Language:Python 1vembha / TCS_crosstalk_evolution
Code repository for the publication. Contains MATLAB codes and sequence data used for evolutionary analysis.
Language:MATLAB 1atareen / signal_transduction_pathways
Computations required for https://doi.org/10.1103/PhysRevE.97.020402 and additional work
Language:Mathematica 0inuritdino / COMMAP
Ligand-Receptor Interaction map based on scRNA-seq and pathway enrichment
Language:R 0mallika2608 / pgm-project
Structure learning for protein signaling pathways
Language:Python 0boutroslab / Supp_Heigwer_2021
The functional analysis of genes provides relevant information to understand cellular function. Further, the mapping of genetic interactions sheds light on how genes act in the emergence of cellular complexity. Here, we present the most extensive genetic interaction and morphological profiling screen in a metazoan cell to date. We profiled 680 000 pairwise RNAi perturbations in more than 38 billion cells and analyzed 73 morphological features by high-throughput imaging.
Language:HTMLCreLox / PhDDissertation
Ph.D. dissertation submitted to the University of Michigan-Ann Arbor (accepted on May 23, 2022)
Language:TeXmeyer-lab / Barney-Peyton
Code for modeling performed in Barney et al.
ModelDBRepository / 126098
A kinetic model of dopamine- and calcium-dependent striatal synaptic plasticity (Nakano et al. 2010)
Language:GAPRescue of plasticity by a computationally predicted protocol (Liu et al. 2013)
Computational modeling of gephyrin-dependent inhibitory transsynaptic signaling (Lupascu et al 2020)
Language:Python- Language:MATLAB
An integrative dynamic model of brain energy metabolism (Coultier et al 2009)
PiotrTymoszuk / collagen_pca
Expression, biological and clinical relevance of the collagen pathway genes in prostate carcinoma
Language:R
