geneontology
There are 7 repositories under geneontology topic.
- go-ontology
geneontology / go-ontology
Source ontology files for the Gene Ontology
Language:Makefile 220 - uberon
obophenotype / uberon
An ontology of gross anatomy covering metazoa. Works in concert with https://github.com/obophenotype/cell-ontology
Language:Emacs Lisp 132 INCATools / ontology-access-kit
Ontology Access Kit: A python library and command line application for working with ontologies
Language:Jupyter Notebook 115Basic and Advanced OBO Graphs: specification and reference implementation
Language:Java 64Material for GO OWL/Protege Tutorial
Language:Web Ontology Language 56A collection of metadata, tools, and files associated with the Gene Ontology public web presence.
Language:JavaScript 46Graph-based modeling environment for biology, including prototype editor and services
Language:JavaScript 37This repository hosts the tracker for issues pertaining to GO annotations.
Language:Python 34AmiGO is the public interface for the Gene Ontology.
Language:JavaScript 29- Language:Scala 28
- Language:HTML 23
- GeneSCFLanguage:Perl 21
The Gene Ontology Helpdesk
Announcements related to ontology changes that may impact groups using GO, such as obsoletions, merges, etc.
- Language:R 11
This is the data repository for the models created and edited with the Noctua tool stack for GO.
Language:Makefile 10- Language:Perl 9
- Language:R 9
Code for converting between BioPAX pathways and Gene Ontology Causal Activity Models (GO-CAM)
Language:Java 8OBO-Edit is an open source ontology editor written in Java.
Language:Java 7- Language:Java 7
- Language:Python 6
Repository for storing GO documentation, directly available through the general GO site
Language:SCSS 6- Language:Java 6
Protégé plugin displaying inferred taxon constraints
Language:Scala 6eriklarsen4 / RNAseq
Template R code for bioinformatics analysis pipeline of transcriptomic Illumina datasets
Language:HTML 5Export GO-CAMs to SIF (Python)
Language:Python 5Quick and dirty client-side reasoner for Noctua
Language:JavaScript 5This curation tool allows curators to make precise assertions as to when functions were gained and lost during evolution and record the evidence (e.g. experimentally supported GO annotations and phylogenetic information including orthology) for those assertions.
Language:Java 4(DEPRECATED) Short form matrix view of all GO annotations for a given gene
Language:JavaScript 4Greco-Lab / FunMappOne
FunMappOne: a tool to summarize and visually navigate functional categories in multiple experiments.
Language:R 4sinc-lab / Comparison-of-Protein-learning
Comparison of protein learning
Language:Jupyter Notebook 4- Language:HTML 3
python library for working with ontologies and ontology associations
Language:Jupyter Notebook 3
