There are 3 repositories under networks-biology topic.
`ggbipart`, an R package for plotting bipartite networks
📖 Generation and Applications of Knowledge Graphs in Systems and Networks Biology
A multi-reference network annotation tool to support omics analysis
A series of simulation codes used to emulate quantum-like networks in the simulation of emergent adaptive behavior, such as network synchronization, and relate the nature of the coupled harmonic oscillators with non-local behavior and chimera states in systems of quantum particles. Coding Used is based on mathematical modelling of transport in quantum many-body systems and networks made tractable using the quantum newtons cradle. A full showcase of this project is discussed in the following videos:https://www.youtube.com/watch?time_continue=115&v=WX3Ds_xCOaE
Tools for Generating, Visualising, and Analysing Link Communities in Networks
A web application for visualizing and exploring pathway knowledge in Biological Expression Language (BEL)
An environment for curating, validating, and exploring knowledge assemblies encoded in BEL
Supplementary data 1 of the paper Mello et al. 2019 (NatureEcoEvo).
Contextualization of protein-protein interaction databases by cell line
Curation of Neurodegeneration in Biological Expression Language (CONIB)
Official site of Biophys group at Unito
Bio-ModelChecker: Using Bounded Constraint Satisfaction to Seamlessly Integrate Observed Behavior with Prior Knowledge of Biological Networks
LaTeX source for "Bio2BEL: Integration of Structured Knowledge with Biological Expression Language"
A machine learning tool to assign edges in protein-protein interaction networks with a function.
Codebase for discovery of latent dynamic connectivity in brain cortical networks
ETH Drain
Collection of Python functions to run network-based analysis in signed and directed networks.