gene-set-enrichment-analysis

There are 0 repository under gene-set-enrichment-analysis topic.

• gencorefacility / r-notebooks

  Gene Set Enrichment Analysis and Over Representation Analysis analysis using R

  gseagene-set-enrichment-analysisover-representation-analysisbioinformaticsgenomics
  17

• francescopatane96 / RNA-seq_Pipeline

  Deposited R scripts allow to execute a complete RNA-seq Pipeline, starting from sequence reads (FASTQ files) to mapping/annotate the genome using a reference, to counts the number of reads for every gene. when raw counts are obtained, DESeq2 module permits to find differentially expressed genes (DEG) and to perform statistical analysis. The last module of the project allows you to use clusterprofiler in order to perform ORA and GSEA analysis (over-representation analysis and gene set enrichment analysis) using GeneOntology (GO), disease ontology (DO), KEGG, reactome eg...

  bam-filesclusterprofilerdeseq2deseq2-analysisdifferentially-expressed-genesgene-set-enrichment-analysisgeneontologygseakeggorarreactomereactome-pathwayrna-seqrna-seq-analysisrna-seq-pipelinescriptwikipathwaysdiseaseontologyover-rapresentation-analysis
  Language:Jupyter Notebook 2

• MolecularPathologyLab / SubtypeExploreR

  Web application that enables users to compare the expression of genes or enrichment of gene sets between different molecular subtypes of colorectal cancer

  enrichment-analysisgene-expressiongene-expression-signaturesgene-set-enrichment-analysisgene-setsgseapathway-enrichment-analysisrshiny
  Language:HTML 1

• meringlab / annotation_system_assessment

  Snakemake pipeline to benchmark 11 functional pathway annotation systems

  gene-set-enrichment-analysispathway-analysisfunctional-annotationgenomicstranscriptomics
  Language:Python 0

• PiotrTymoszuk / lymphokine_RCC

  Role of CXCL9/10/11, CXCL13 and XCL1 in recruitment and suppression of cytotoxic T cells in renal cell carcinoma

  cancergene-set-enrichment-analysisimmunemetabolismmonte-carlo-simulationrenalsemi-supervised-clusteringtcelltranscriptometumor-immunogenicityimmune-checkpoint
  Language:R 0

• PiotrTymoszuk / collagen_pca

  Expression, biological and clinical relevance of the collagen pathway genes in prostate carcinoma

  collagendifferential-gene-expressiongene-ontology-termsgene-set-enrichment-analysisgradient-boosted-machinesmetabolic-modelsprostate-cancersemi-supervised-clusteringsignaling-pathwayssurvival-analysis
  Language:R

• thimler / RNAseq

  Assessing the effectiveness of endocrine therapy in breast cancer using RNAseq data

  bioinformaticsdifferential-expressiongene-set-enrichment-analysisrna-seq-analysis
  Language:R

• thimler / SCRNAseq

  Gene set enrichment analysis from scRNA seq data : in search of the original tissue

  bioinformaticsgene-set-enrichment-analysisscrna-seq-analysis
  Language:R