JoHof

lungmask

Automated lung segmentation in CT

IntegratedGradientsTutorial

Very concise example of integrated gradients (a method to reveal areas of attention in input images)

set-nifti-storage-convention

FSL-tools wrapper for setting a defined storage convention to nifti files

semantic-profiles

matlab implementation of a big data machine learning algorithm to associate noisy multiple instance labels with high dimensional feature vectors

stacl

Consensus clustering algorithm based on k-means and stability measures

volume-viewer

Small lightweight viewer to scroll trough volumetric image data such as CT or MR stored in numpy matrices.

cornerstone

JavaScript library to display interactive medical images including but not limited to DICOM

dicom2nifti

JuliaBoxTutorials

lol

package for dimensionality reduction under supervised data scenarios

MONAI

AI Toolkit for Healthcare Imaging

nipype_tutorial

Learn Nipype with these tutorial notebooks - go here to see them online -->

pytorch-lightning

The lightweight PyTorch wrapper for ML researchers. Scale your models. Write less boilerplate

pytorch_segmentation

Semantic segmentation models, datasets and losses implemented in PyTorch.

sHDP

Nonparametric Topic Modeling with Word Vectors

surface-distance

Library to compute surface distance based performance metrics for segmentation tasks.