Digital Slide Archive's repositories
HistomicsTK
A Python toolkit for pathology image analysis algorithms.
digital_slide_archive
The official deployment of the Digital Slide Archive and HistomicsTK.
HistomicsUI
A Girder plugin for pathology image annotations and analysis.
CNNCellDetection
This repository contains adaptations of the state-of-the-art deep learning based object detection models for the detection of cell nuclei in histology images
HistomicsStream
A whole-slide image reader for TensorFlow
DSA-WSI-DeID
A workflow for redacting PHI from whole slide images (WSI) based on the Digital Slide Archive.
digitalslidearchive.info
Documentation for installing and maintaining the Digital Slide Archive, Girder, and HistomicsTK
superpixel-classification
A test cli for classifying superpixels with arbitrary labels
annotation-tracker
A Girder plugin for annotation tracking in HistomicsUI
HistomicsDetect
A package for cell detection models using TensorFlow
large-image-utilities
Experimental utilities for use with large_image
ImageDePHI-Phase-I
Whole Slide Image Deidentification for PHI
import-tracker
A Girder plugin for data import tracking in HistomicsUI
large_image_source_isyntax
A large_image source using the Philips library for isyntax files
DigitalSlideArchive.github.io
This is a redirect to the main documentation
girder_assetstore
A Girder plugin for connecting remote Girder instances as Assetstores