tomography

There are 16 repositories under tomography topic.

invesalius / invesalius3
3D medical imaging reconstruction software
dicom dicom-viewer magnetic-resonance-imaging medical-image-processing medical-imaging segmentation tomographic-images tomography
Language:Python 738
CERN / TIGRE
TIGRE: Tomographic Iterative GPU-based Reconstruction Toolbox
tomography matlab toolbox cuda x-ray image-reconstruction gpus tigre python
Language:MATLAB 707
odlgroup / odl
Operator Discretization Library https://odl.readthedocs.io/
mathematics prototyping optimization inverse-problems tomography discretization python imaging
Language:Python 416
porespy
PMEAL / porespy
A set of tools for characterizing and analyzing 3D images of porous materials
3d-images image-analysis porespy porous-materials porous-media python scientific-visualization tomography voxel-generator
Language:Python 374
tomopy / tomopy
Tomographic Reconstruction in Python
tomography python reconstruction toolbox
Language:Python 368
OpenChemistry / tomviz
Cross platform, open source application for the processing, visualization, and analysis of 3D tomography data
tomography visualization 3d-graphics open-source opengl scientific-visualization open-science python materials-science
Language:C++ 345
matteo-ronchetti / torch-radon
Computational Tomography in PyTorch
pytorch cuda tomography inverse-problems shearlet-transform radon-transform hacktoberfest
Language:Python 257
OpenEIT / OpenEIT
Python based dashboard for real-time Electrical Impedance Tomography including image reconstruction using Back Projection, Graz Consensus and Gauss Newton methods
eit image-reconstruction python tomography biomedical-image-processing electrical-impedance-tomography biomedical-instrumentation inverse-problems
Language:Python 248
pyEIT
eitcom / pyEIT
Python based toolkit for Electrical Impedance Tomography
eit python tomography inverse-problems mesh-generation electrical-impedance-tomography eit-imaging finite-element-methods
Language:Python 216
LEAP
LLNL / LEAP
comprehensive library of 3D transmission Computed Tomography (CT) algorithms with Python and C++ APIs, a PyQt GUI, and fully integrated with PyTorch
machine-learning artificial-intelligence computed-tomography cone-beam medical-imaging parallel-beam tomography spect vam leap ct image-reconstruction metal-artifact-reduction iterative-reconstruction beamhardening bhc scatter-correction abel-transform tomographic-reconstruction helical-reconstruction
Language:Cuda 187
sandialabs / pyGSTi
A python implementation of Gate Set Tomography
characterization gst qcvv quantum-computing scr-2018 snl-quantum-computing tomography
Language:Jupyter Notebook 165
awesome-cryoem
kuixu / awesome-cryoem
A collaborative list of awesome CryoEM (Cryo Electron Microscopy) resources.
cryo-em electron-microscopy density-map 3d-reconstruction 3d-denoise model-building protein-structures tomography cryoem
151
dkazanc / TomoPhantom
Software to generate 2D/3D/4D analytical phantoms and their Radon transforms (parallel beam) for image processing
image reconstruction tomography radon denoising-images deblurring matlab phantom image-reconstruction 3d-phantoms computed-tomography astra-toolbox image-classification machine-learning
Language:C 127
CIL
TomographicImaging / CIL
A versatile python framework for tomographic imaging
tomography optimisation python
Language:Python 127
EO-College / tomography_tutorial
A tutorial for Synthetic Aperture Radar Tomography
python gdal sar remote-sensing earth-observation tomography
Language:Jupyter Notebook 125
JeffFessler / MIRT.jl
MIRT: Michigan Image Reconstruction Toolbox (Julia version)
image-reconstruction julia tomography mri inverse-problems nufft sinogram k-space lasso sparse-coding optimization-algorithms mirt
Language:Julia 116
adler-j / learned_primal_dual
Learned Primal-Dual Reconstruction
inverse-problems mathematics tomography computed-tomography python machine-learning odl
Language:Python 104
ahendriksen / tomosipo
A library for painless 3D tomographic reconstruction
cuda python3 scientific-computing tomography
Language:Jupyter Notebook 101
yijiang1 / fold_slice
Electron/X-ray ptychography and tomography/laminography
microscopy ptychography tomography xray-diffraction computational-science gpt
Language:MATLAB 101
adler-j / learned_gradient_tomography
Solving ill-posed inverse problems using iterative deep neural networks
odl tomography inverse-problems machine-learning mathematics
Language:Python 97
fmagrini / seislib
Seismic imaging at local, regional, and global scale
ambient-noise imaging inversion python seismology surface-waves tomography teleseismic-earthquakes
Language:Python 92
jnagy1 / IRtools
MATLAB package of iterative regularization methods and large-scale test problems. This software is described in the paper "IR Tools: A MATLAB Package of Iterative Regularization Methods and Large-Scale Test Problems" that will be published in Numerical Algorithms, 2018.
regularization matlab inverse-problems krylov-subspace-methods image-deblurring tomography nmr conjugate-gradient gmres fista
Language:MATLAB 91
villekf / OMEGA
Open-source multi-dimensional tomographic reconstruction software (OMEGA)
emission-tomography reconstruction gate medical-imaging pet opengate opencl gpu gpgpu matlab octave image-reconstruction computed-tomography cone-beam-ct cuda python tomography inverse-problems
Language:MATLAB 88
IsoNet-cryoET / IsoNet
Self-supervised learning for isotropic cryoET reconstruction
cryo-em cryo-et cryoet deep-learning image-processing inverse-problems tomography
Language:Python 87
ToFuProject / tofu
Project for an open-source python library for synthetic diagnostics and tomography for Fusion devices
fusion tomography diagnostics plasma data-visualization raytracer ray-tracing nuclear-fusion python conda pip tokamak synthetic-diagnostics toolbox open-source imas science-research physics plasma-physics plasma-diagnostics
Language:Python 79
DiamondLightSource / discorpy
Camera calibration with sub-pixel accuracy: https://discorpy.readthedocs.io/
distortion-correction tomography camera-calibration radial-distortion perspective-distortion fisheye-camera fisheye-undistorting
Language:Python 78
GeoscienceAustralia / hiperseis
High Performance Seismologic Data and Metadata Processing System
geophysics tomography inversion seismology
Language:Jupyter Notebook 61
LAVI-USP / DBT-Reconstruction
LAVI open-source reconstruction toolbox for digital breast tomosynthesis (DBT)
toolbox dbt reconstruction tomography x-ray cuda dbt-reconstruction digital-breast-tomosynthesis
Language:MATLAB 61
TomographicImaging / CCPi-Regularisation-Toolkit
The set of CPU/GPU optimised regularisation modules for iterative image reconstruction and other image processing tasks
regularization regularisation inverse-problems denoising reconstruction gpu image-reconstruction tomography iterative-reconstruction
Language:C 60
xin2zhang / MCTomo
2D and 3D Monte Carlo seismic tomography
geophysics tomography
Language:Fortran 60
algotom / algotom
Data processing algorithms for tomography: https://algotom.readthedocs.io
grid-scanning-tomography half-acquisition-scan helical-scan image-processing image-reconstruction phase-contrast-imaging phase-unwrapping preprocessing-techniques ring-artifact-removal speckle-tracking synchrotron-based-tomography tomography x-ray-imaging
Language:Python 59
rigetti / forest-benchmarking
A library for quantum characterization, verification, validation (QCVV), and benchmarking using pyQuil.
benchmarking forest qcvv quantum-computing tomography
Language:Python 58
nghia-vo / sarepy
Numerical techniques for ring artifact removal in tomography https://sarepy.readthedocs.io/
ring-artifact-reduction xray-micro-tomography tomography
Language:Python 57
arttumiettinen / pi2
C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.
image-analysis python 3d-images tomography image-processing brain-imaging c-plus-plus cluster-computing computing-cluster high-performance-computing stitching non-rigid-registration non-rigid-stitching cross-platform bioimaging bioimage-analysis bioimage-informatics
Language:C++ 56
MuRAT
LucaDeSiena / MuRAT
A multi-resolution seismic attenuation tomography code - currently in its 3.0 release
seismology attenuation tomography matlab coda-attenuation absorption inversion wave-attenuation
Language:MATLAB 54
dkazanc / ToMoBAR
TOmographic MOdel-BAsed Reconstruction (ToMoBAR) software
reconstruction regularization inverse-problems artifacts x-ray astra-toolbox fista admm model-based regularisation multigpu cupy tomographic-reconstruction tomography
Language:Python 52